View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19230_low_30 (Length: 237)

Name: NF19230_low_30
Description: NF19230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19230_low_30
NF19230_low_30
[»] chr8 (1 HSPs)
chr8 (1-232)||(13455331-13455556)
[»] chr3 (7 HSPs)
chr3 (56-128)||(33832613-33832684)
chr3 (71-118)||(8175801-8175848)
chr3 (56-131)||(26365476-26365551)
chr3 (83-127)||(16277950-16277993)
chr3 (81-129)||(31680783-31680831)
chr3 (36-132)||(37318530-37318626)
chr3 (82-118)||(48558738-48558774)
[»] chr6 (2 HSPs)
chr6 (31-128)||(20568254-20568351)
chr6 (81-115)||(29204879-29204913)
[»] chr7 (4 HSPs)
chr7 (31-97)||(3529784-3529850)
chr7 (81-127)||(8725136-8725182)
chr7 (56-112)||(8875719-8875775)
chr7 (65-129)||(21086139-21086202)
[»] chr4 (9 HSPs)
chr4 (82-128)||(31587489-31587535)
chr4 (31-105)||(51777848-51777922)
chr4 (54-120)||(21476086-21476153)
chr4 (78-118)||(12868034-12868074)
chr4 (81-129)||(43143771-43143818)
chr4 (71-127)||(44975949-44976004)
chr4 (81-129)||(50657931-50657978)
chr4 (82-130)||(51640459-51640507)
chr4 (64-128)||(53685120-53685183)
[»] chr2 (4 HSPs)
chr2 (83-128)||(30811830-30811874)
chr2 (92-131)||(41528835-41528874)
chr2 (65-114)||(25463277-25463326)
chr2 (82-118)||(26206332-26206368)
[»] chr5 (2 HSPs)
chr5 (65-120)||(9963451-9963506)
chr5 (81-129)||(7988899-7988946)
[»] chr1 (4 HSPs)
chr1 (81-120)||(4354110-4354149)
chr1 (83-132)||(2605284-2605333)
chr1 (81-118)||(17889112-17889149)
chr1 (58-115)||(32635168-32635225)
[»] scaffold0008 (1 HSPs)
scaffold0008 (81-118)||(43704-43741)


Alignment Details
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 13455331 - 13455556
Alignment:
Q  1 tcatgttacaagtatggcaaagaagttctctgagtttagctcagttcgtatatatattgcattatatattcagggattgaggttcgaacttcgaacatcc 100  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  13455331 tcatgttacaagtatgtcaaagaagttccctgagtttagctcagttcgtatagatattgcattatatattcagggattgagattcgaacttcgaacatcc 13455430  T
Q  101 cacttattcaccttataaagatgaatttttaagtgttaaggttacttcnnnnnnngtatgtgtaggaaggaggtgagctggaaataacaatgtttttcta 200  Q
     ||||||||| |      ||||||||||||||||||||||||||||||       |||||||||||||||||| ||||||||||||||||||||||||||    
T  13455431 tacttattcatc------agatgaatttttaagtgttaaggttacttcaaaaaaagtatgtgtaggaaggaggcgagctggaaataacaatgtttttcta 13455524  T
Q  201 acaataagttttgatttctatgtatgattcag 232  Q
    |||||||||||||||||| |||| ||||||||    
T  13455525 acaataagttttgatttccatgtctgattcag 13455556  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 33832613 - 33832684
Alignment:
Q  56 attgcattatatattcagggattgaggttcgaacttcgaacatcccacttattcaccttataaagatgaattt 128  Q
    |||||||||||||| |||||||||| |||||||| |||||||| ||||||||||| |||| ||| ||||||||    
T  33832613 attgcattatatatgcagggattgaagttcgaacatcgaacattccacttattcatctta-aaatatgaattt 33832684  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 8175801 - 8175848
Alignment:
Q  71 cagggattgaggttcgaacttcgaacatcccacttattcaccttataa 118  Q
    ||||||| |||||||||||| |||||| ||||||||||||||||||||    
T  8175801 cagggatcgaggttcgaactccgaacaccccacttattcaccttataa 8175848  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 131
Target Start/End: Original strand, 26365476 - 26365551
Alignment:
Q  56 attgcattatatattcagggattgaggttcgaacttcgaacatcccacttattcaccttataaagatgaattttta 131  Q
    ||||||| ||||||  |||| |||| ||||||||| |  ||||||||||||||||| | |||||| ||||||||||    
T  26365476 attgcataatatatgtaggggttgatgttcgaactccagacatcccacttattcacttgataaaggtgaattttta 26365551  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 127
Target Start/End: Complemental strand, 16277993 - 16277950
Alignment:
Q  83 ttcgaacttcgaacatcccacttattcaccttataaagatgaatt 127  Q
    |||||||| || |||||||||||||||||||||| ||||||||||    
T  16277993 ttcgaactccggacatcccacttattcaccttat-aagatgaatt 16277950  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 31680783 - 31680831
Alignment:
Q  81 ggttcgaacttcgaacatcccacttattcaccttataaagatgaatttt 129  Q
    |||| |||||||| ||| ||||||||||||||||| |||| ||||||||    
T  31680783 ggtttgaacttcggacaccccacttattcaccttaaaaaggtgaatttt 31680831  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 132
Target Start/End: Complemental strand, 37318626 - 37318530
Alignment:
Q  36 ttagctcagttcgtatatatattgcattatatattcagggattgaggttcgaacttcgaacatcccacttattcaccttataaagatgaatttttaa 132  Q
    ||||||| ||| ||| | ||||||||| |||||| ||| | | || ||| |||||||| ||| | ||||||||||| ||| ||| ||||||||||||    
T  37318626 ttagctcggttggtaaaaatattgcataatatatgcagaggtcgaagtttgaacttcggacaactcacttattcactttaaaaaaatgaatttttaa 37318530  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 118
Target Start/End: Original strand, 48558738 - 48558774
Alignment:
Q  82 gttcgaacttcgaacatcccacttattcaccttataa 118  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  48558738 gttcgaacctcgaacatcccacttattcactttataa 48558774  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 128
Target Start/End: Complemental strand, 20568351 - 20568254
Alignment:
Q  31 tgagtttagctcagttcgtatatatattgcattatatattcagggattgaggttcgaacttcgaacatcccacttattcaccttataaagatgaattt 128  Q
    |||| ||||||||||| |||   | ||||||| |||||| ||||| | | |||||||||  |||||| |||||||||||||||||||||| |||||||    
T  20568351 tgagcttagctcagttggtaaggacattgcataatatatgcaggggtcggggttcgaaccccgaacaccccacttattcaccttataaaggtgaattt 20568254  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 115
Target Start/End: Complemental strand, 29204913 - 29204879
Alignment:
Q  81 ggttcgaacttcgaacatcccacttattcacctta 115  Q
    ||||||||||||||||| |||||||||||||||||    
T  29204913 ggttcgaacttcgaacaccccacttattcacctta 29204879  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 3529784 - 3529850
Alignment:
Q  31 tgagtttagctcagttcgtatatatattgcattatatattcagggattgaggttcgaacttcgaaca 97  Q
    |||||||| ||||||| |||   |||||||||| ||||| |||||| ||||||||||||||||||||    
T  3529784 tgagtttaactcagttggtagggatattgcattttatatacagggactgaggttcgaacttcgaaca 3529850  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 127
Target Start/End: Complemental strand, 8725182 - 8725136
Alignment:
Q  81 ggttcgaacttcgaacatcccacttattcaccttataaagatgaatt 127  Q
    |||||||||  |||||| |||||||||||||||||||||| ||||||    
T  8725182 ggttcgaaccccgaacaccccacttattcaccttataaaggtgaatt 8725136  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 8875775 - 8875719
Alignment:
Q  56 attgcattatatattcagggattgaggttcgaacttcgaacatcccacttattcacc 112  Q
    ||||||| |||||| ||||| |||||||||| || ||||||| | ||||||||||||    
T  8875775 attgcataatatatgcaggggttgaggttcgtacctcgaacacctcacttattcacc 8875719  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 129
Target Start/End: Original strand, 21086139 - 21086202
Alignment:
Q  65 tatattcagggattgaggttcgaacttcgaacatcccacttattcaccttataaagatgaatttt 129  Q
    ||||| ||||||| || ||||||||| || ||| || ||||||||||||||| ||||||||||||    
T  21086139 tatatgcagggatcgaagttcgaactccggacacccaacttattcaccttat-aagatgaatttt 21086202  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 128
Target Start/End: Original strand, 31587489 - 31587535
Alignment:
Q  82 gttcgaacttcgaacatcccacttattcaccttataaagatgaattt 128  Q
    ||||||| ||||||||||  |||||||||||||||||||||||||||    
T  31587489 gttcgaatttcgaacatcttacttattcaccttataaagatgaattt 31587535  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 51777848 - 51777922
Alignment:
Q  31 tgagtttagctcagttcgtatatatattgcattatatattcagggattgaggttcgaacttcgaacatcccactt 105  Q
    |||||||||||||||| |||  ||||||||||  ||||| ||||||| | |||||||||| || |||||||||||    
T  51777848 tgagtttagctcagttagtagctatattgcatattatatgcagggatcggggttcgaactccggacatcccactt 51777922  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 21476153 - 21476086
Alignment:
Q  54 atattgcattat-atattcagggattgaggttcgaacttcgaacatcccacttattcaccttataaag 120  Q
    |||||||||||| |||| ||||| | || ||||||||| || |||||||||||||||| |||||||||    
T  21476153 atattgcattattatatgcaggggtcgatgttcgaactccggacatcccacttattcatcttataaag 21476086  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 12868074 - 12868034
Alignment:
Q  78 tgaggttcgaacttcgaacatcccacttattcaccttataa 118  Q
    |||||||||||   |||||||||||||||||||||||||||    
T  12868074 tgaggttcgaatcccgaacatcccacttattcaccttataa 12868034  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 43143771 - 43143818
Alignment:
Q  81 ggttcgaacttcgaacatcccacttattcaccttataaagatgaatttt 129  Q
    |||||||||| || ||| |||||||||||||||||||||| ||||||||    
T  43143771 ggttcgaactccggacaccccacttattcaccttataaag-tgaatttt 43143818  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 127
Target Start/End: Original strand, 44975949 - 44976004
Alignment:
Q  71 cagggattgaggttcgaacttcgaacatcccacttattcaccttataaagatgaatt 127  Q
    ||||| ||| ||||||||  ||| |||||||||||||||||||||| ||||||||||    
T  44975949 caggggttggggttcgaatctcggacatcccacttattcaccttat-aagatgaatt 44976004  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 50657931 - 50657978
Alignment:
Q  81 ggttcgaacttcgaacatcccacttattcaccttataaagatgaatttt 129  Q
    |||||||||| | ||||||||||||||||| ||||| ||||||||||||    
T  50657931 ggttcgaactccaaacatcccacttattcatcttat-aagatgaatttt 50657978  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 51640459 - 51640507
Alignment:
Q  82 gttcgaacttcgaacatcccacttattcaccttataaagatgaattttt 130  Q
    |||||||| ||||||| ||||||||||||||||| |||  |||||||||    
T  51640459 gttcgaacctcgaacaccccacttattcaccttaaaaaagtgaattttt 51640507  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 53685120 - 53685183
Alignment:
Q  64 atatattcagggattgaggttcgaacttcgaacatcccacttattcaccttataaagatgaattt 128  Q
    |||||| ||||| | || |||||||| ||||||||  ||||||||||||||| ||||||||||||    
T  53685120 atatatgcaggggtcgaagttcgaacctcgaacatttcacttattcacctta-aaagatgaattt 53685183  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 128
Target Start/End: Complemental strand, 30811874 - 30811830
Alignment:
Q  83 ttcgaacttcgaacatcccacttattcaccttataaagatgaattt 128  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||    
T  30811874 ttcgaacttcggacatcccacttattcaccttat-aagatgaattt 30811830  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 131
Target Start/End: Complemental strand, 41528874 - 41528835
Alignment:
Q  92 cgaacatcccacttattcaccttataaagatgaattttta 131  Q
    |||||| | |||||||||||||||||||||||||||||||    
T  41528874 cgaacacctcacttattcaccttataaagatgaattttta 41528835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 114
Target Start/End: Complemental strand, 25463326 - 25463277
Alignment:
Q  65 tatattcagggattgaggttcgaacttcgaacatcccacttattcacctt 114  Q
    ||||| |||||||||||||||||||| |||||| |||  |||||||||||    
T  25463326 tatatacagggattgaggttcgaactccgaacaccccttttattcacctt 25463277  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 118
Target Start/End: Complemental strand, 26206368 - 26206332
Alignment:
Q  82 gttcgaacttcgaacatcccacttattcaccttataa 118  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  26206368 gttcgaacctcgaacaccccacttattcaccttataa 26206332  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 9963451 - 9963506
Alignment:
Q  65 tatattcagggattgaggttcgaacttcgaacatcccacttattcaccttataaag 120  Q
    ||||| ||||| ||| ||||||||||||| ||  ||||||||||||||||||||||    
T  9963451 tatatgcaggggttggggttcgaacttcggaccccccacttattcaccttataaag 9963506  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 7988899 - 7988946
Alignment:
Q  81 ggttcgaacttcgaacatcccacttattcaccttataaagatgaatttt 129  Q
    ||||||||| ||| ||||||||||||||||| |||||||| ||||||||    
T  7988899 ggttcgaacctcggacatcccacttattcactttataaag-tgaatttt 7988946  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 120
Target Start/End: Complemental strand, 4354149 - 4354110
Alignment:
Q  81 ggttcgaacttcgaacatcccacttattcaccttataaag 120  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  4354149 ggttcgaacttcggacaccccacttattcaccttataaag 4354110  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 2605333 - 2605284
Alignment:
Q  83 ttcgaacttcgaacatcccacttattcaccttataaagatgaatttttaa 132  Q
    |||||||||| |||| | |||||||||||||| |||| ||||||||||||    
T  2605333 ttcgaacttctaacacctcacttattcaccttttaaaaatgaatttttaa 2605284  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 118
Target Start/End: Original strand, 17889112 - 17889149
Alignment:
Q  81 ggttcgaacttcgaacatcccacttattcaccttataa 118  Q
    |||||||||| || ||||||||||||||||||||||||    
T  17889112 ggttcgaactccggacatcccacttattcaccttataa 17889149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 32635168 - 32635225
Alignment:
Q  58 tgcattatatattcagggattgaggttcgaacttcgaacatcccacttattcacctta 115  Q
    |||||||||||| ||||| ||| |||||||||  || ||| |||||||||||||||||    
T  32635168 tgcattatatatgcaggggttggggttcgaaccccggacaccccacttattcacctta 32635225  T

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Target: scaffold0008 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 118
Target Start/End: Complemental strand, 43741 - 43704
Alignment:
Q  81 ggttcgaacttcgaacatcccacttattcaccttataa 118  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  43741 ggttcgaacctcgaacaccccacttattcaccttataa 43704  T

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