View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19230_low_33 (Length: 232)
Name: NF19230_low_33
Description: NF19230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19230_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 47619037 - 47619176
Alignment:
| Q |
1 |
tcatcatgaatgagattgcattactgaacaagcaacagcttgagcccagtgccttaatttggtttttataagtgctggatcatcccctgcaaccacatta |
100 |
Q |
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| T |
47619037 |
tcatcatgaatgagattgcattactgaacaagcaacagcttgagcccagtgccttaatttggtttttataagtgctggatcatcccctgcaaccacatta |
47619136 |
T |
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| Q |
101 |
atcaattcaccaaattaataacaactaattacgggctaaa |
140 |
Q |
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| T |
47619137 |
atcaattcaccaaattaataacaactaattacgggctaaa |
47619176 |
T |
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Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 47619205 - 47619268
Alignment:
| Q |
139 |
aatatacaataaacacaaccgaatactttgaaacatctatacacgaattaaacacgttagagta |
202 |
Q |
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| T |
47619205 |
aatatacaataaacacaaccgaatactttgaaacatttatacacaaattaaacacattagagta |
47619268 |
T |
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