View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19230_low_5 (Length: 558)
Name: NF19230_low_5
Description: NF19230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19230_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 492; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 12 - 540
Target Start/End: Original strand, 13309020 - 13309548
Alignment:
| Q |
12 |
cagagaatgaaatatgttgctcttttattttactattgttgttgcaatggttctgctccctaataatgtatacacaaaagttatgaattattatgatata |
111 |
Q |
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| T |
13309020 |
cagagaatgaaatatgttgctcttttattttactatttttgttgcaatggttctgctccctaataatgtatacacaaaagttatgaatgattatgatata |
13309119 |
T |
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| Q |
112 |
tgatccatttatcctagtgatagtaacttagtaagtacttcacttgatctatatacttcctccgtcctaaattataagtcgatgnnnnnnncaatttcct |
211 |
Q |
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| T |
13309120 |
tgatccatttatcctagtgatagtaacttagtaagtacttcacttgatctatatacttcctccgtcctaaattataagccgatgaaaaaaacaatttcct |
13309219 |
T |
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| Q |
212 |
gattaaaccaatccttctaataggtttgttttgttaactttagaacaaacttcctcaccattttcaccttgattttacaaaaacccacatgtaatatttg |
311 |
Q |
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| T |
13309220 |
gattaaacctatccttctaataggtttgttttgttaactttagaacaaacttcctcaccattttcaccttgattttacaaaaacccacatgtaatatttg |
13309319 |
T |
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| Q |
312 |
gcttcctagtttgtccaatgtatgactatcatatatattgatgcattacataggaaatgatttccaaaagaatggaatcatatgagatttattaaaagat |
411 |
Q |
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| T |
13309320 |
gcttcctagtttgtccaatgtatgactatcatatatattgatgcattacataggaaatgatttccaaaagaatggaatcatatgagatttattaaaagat |
13309419 |
T |
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| Q |
412 |
ctaagaacagttacatgatgcaaaaacacaagaaaatgattaaacacagcgtctgttggacaataaaaatcgggggttgactctgtttgggcattggata |
511 |
Q |
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| T |
13309420 |
ctaagaacagttacatgatgcaaaaacacaagaaaatgattaaacacagcgtctgttggacaataaaaatcgggggttgactctgtttgggcattggata |
13309519 |
T |
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| Q |
512 |
ccctgcctcggggaagctcgcagcgttga |
540 |
Q |
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| T |
13309520 |
ccctgcctcggggaagctcgcagcgttga |
13309548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 371 - 451
Target Start/End: Original strand, 13310959 - 13311039
Alignment:
| Q |
371 |
atttccaaaagaatggaatcatatgagatttattaaaagatctaagaacagttacatgatgcaaaaacacaagaaaatgat |
451 |
Q |
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| T |
13310959 |
atttccaaaataatagaaccatacgagactaattgaaagatctaagaccaattacatgattcaaaaacacaagaaaatgat |
13311039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 251 - 335
Target Start/End: Original strand, 13307740 - 13307824
Alignment:
| Q |
251 |
ttagaacaaacttcctcaccattttcaccttgattttacaaaaacccacatgtaatatttggcttcctagtttgtccaatgtatg |
335 |
Q |
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| T |
13307740 |
ttaggacaaactttctcgctattttcaccttggtttcacaaagtcctatttgtaatatttggcttcctattttggtcaatgtatg |
13307824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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