View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19230_low_6 (Length: 468)
Name: NF19230_low_6
Description: NF19230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19230_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 414; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 9 - 450
Target Start/End: Complemental strand, 4491901 - 4491460
Alignment:
| Q |
9 |
acatcatcagaaactgagagccttacccttgacaaattttggggactctatttcatatgtgctaccacttccacaatctgcttagtactagctttattac |
108 |
Q |
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| T |
4491901 |
acatcttcagaaactgagagccttacccttgacaaattttggggactctatttcatatgtgctaccacttccacaatctgcttattactagctttattac |
4491802 |
T |
|
| Q |
109 |
agaagtacttctataaccataacaactgcgaagagcaagctcctcaactttctcagggaaatgtaatcacagaacctaatgttgataataatcaccaact |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4491801 |
agaagtacttctataaccataacaactgcgaagagcaagctcatcaactttctcagggaaatgtaatcacagaacctaatgttgataataatcaccaact |
4491702 |
T |
|
| Q |
209 |
tactcaaggaaatgtaatcgccgaatctaatgttgataacaatcatcagcttcctcaaggaaacgtaatctccgaatctgatgatgataataacaaagat |
308 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4491701 |
tactcaaggaaatgtaatcaccgaatctaatgttgataacaatcatcagcttcctcaaggaaacgtaatctccgaatctgatgatgataataacaaagat |
4491602 |
T |
|
| Q |
309 |
ttgacaggagcatttagaaatggtacagtcctatacattggaaatctcatgcctttaaataatgctgcaacttatggtggaagtgtgatacaaggtgtac |
408 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
4491601 |
ttgacaggagcatttagaaatggtacaggcctatacattggaaatctcatgcctttaaataatgcagcaacttatggtggaagtgtaatacaaggtgtac |
4491502 |
T |
|
| Q |
409 |
gtcgtcgaaattcaccaaggttggagagtgtaagcatttctg |
450 |
Q |
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| T |
4491501 |
gtcgtcgaaattcaccaaggttggagagtgtaagcatttctg |
4491460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 16 - 450
Target Start/End: Complemental strand, 4497573 - 4497139
Alignment:
| Q |
16 |
cagaaactgagagccttacccttgacaaattttggggactctatttcatatgtgctaccacttccacaatctgcttagtactagctttattacagaagta |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4497573 |
cagaaactgagagccttacccttgacaaattttgggtactctatttcatatgtgctaccacttccacaatctgcttattactagctttattacagaagta |
4497474 |
T |
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| Q |
116 |
cttctataaccataacaactgcgaagagcaagctcctcaactttctcagggaaatgtaatcacagaacctaatgttgataataatcaccaacttactcaa |
215 |
Q |
| |
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|||| ||||||||||||| || |||||| |||||| ||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
4497473 |
cttccataaccataacaattgtgaagaggaagctcaccaactttctcaaggaaatgtaatctctgaacctaatgttgataataatcaccaacttactcaa |
4497374 |
T |
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| Q |
216 |
ggaaatgtaatcgccgaatctaatgttgataacaatcatcagcttcctcaaggaaacgtaatctccgaatctgatgatgataataacaaagatttgacag |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4497373 |
ggaaatgtaatcgccgaatctaatgttgataacaatcatcaacttcctcaaggaaacgtaatctccgaatctgatgatgataataacaaagatttgacag |
4497274 |
T |
|
| Q |
316 |
gagcatttagaaatggtacagtcctatacattggaaatctcatgcctttaaataatgctgcaacttatggtggaagtgtgatacaaggtgtacgtcgtcg |
415 |
Q |
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|||||| |||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
4497273 |
gagcatctagaaatggtacaggcttatacattggaaatctcatgcctttaaataacgctgcaacttatggtggaattgtaatacaaggtgtacgtcgtcg |
4497174 |
T |
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| Q |
416 |
aaattcaccaaggttggagagtgtaagcatttctg |
450 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
4497173 |
aaattcaccaaggttggagagtgtaagcatttctg |
4497139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 16 - 175
Target Start/End: Complemental strand, 4504150 - 4503994
Alignment:
| Q |
16 |
cagaaactgagagccttacccttgacaaattttggggactctatttcatatgtgctaccacttccacaatctgcttagtactagctttattacagaagta |
115 |
Q |
| |
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||||||| ||||| || ||||||| |||||| | |||||| ||| ||||||||||| |||||||||| |||||| || ||||||||||||| ||| || |
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| T |
4504150 |
cagaaacggagagtctgacccttgccaaattcttgggactatatatcatatgtgctgccacttccaccatctgcatattactagctttattgaggaaata |
4504051 |
T |
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| Q |
116 |
cttctataaccataacaactgcgaagagcaagctcctcaactttctcagggaaatgtaat |
175 |
Q |
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||| |||||||||| ||| || ||||||| |||||||| |||| ||||||||||| |
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| T |
4504050 |
tttccataaccataatcactatgatgagcaag---ctcaacttcctcaaggaaatgtaat |
4503994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 258 - 442
Target Start/End: Complemental strand, 4504013 - 4503823
Alignment:
| Q |
258 |
cttcctcaaggaaacgtaatctccgaatctgatgatga---taataacaaagatttgacaggagcatttagaaatggtacagtcctatacattggaaatc |
354 |
Q |
| |
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|||||||||||||| ||||| |||||||||||||||| ||||||||| || ||| || || ||||||||||||||| ||| |||| ||| |||| |
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| T |
4504013 |
cttcctcaaggaaatgtaattgccgaatctgatgatgaaaataataacaatgacatgaagagatcaattagaaatggtacaggcctgtacaatgggaatc |
4503914 |
T |
|
| Q |
355 |
tcat---gcctttaaataatgctgcaacttatggtggaagtgtgatacaaggtgtacgtcgtcgaaattcaccaaggttggagagtgtaag |
442 |
Q |
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|||| | | |||||||| ||||| ||| ||||||| ||| |||||||| |||||| |||||||||||||||| ||||| |||||| |
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| T |
4503913 |
tcatcatgacattaaataaagctgcctcttttggtggatctgtattacaaggtatacgtcatcgaaattcaccaaggcaggagaatgtaag |
4503823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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