View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19230_low_9 (Length: 391)

Name: NF19230_low_9
Description: NF19230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19230_low_9
NF19230_low_9
[»] chr1 (2 HSPs)
chr1 (19-374)||(3151878-3152233)
chr1 (200-317)||(15381066-15381183)
[»] chr7 (8 HSPs)
chr7 (192-354)||(21200350-21200512)
chr7 (204-312)||(24284912-24285020)
chr7 (192-354)||(21195104-21195266)
chr7 (199-369)||(24238894-24239064)
chr7 (200-295)||(24158638-24158733)
chr7 (208-334)||(24231720-24231846)
chr7 (192-247)||(24121200-24121255)
chr7 (199-374)||(24145308-24145483)
[»] chr2 (1 HSPs)
chr2 (204-377)||(10989565-10989740)


Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 374
Target Start/End: Complemental strand, 3152233 - 3151878
Alignment:
Q  19 agatcagcacaatacacttcattatagctgttatagtatgtatggcaataatatactggtaaggatgctgtgtcaattggtaacatttgggatctatcgc 118  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3152233 agatcagcacaatacacttcattatagctattatagtatgtatggcaataatatactggtaaggatgctgtgtcaattggtaacatttgggatctatcgc 3152134  T
Q  119 ggaaatgtggggcacactgaggcttagttaacttatctttgagctcctgtgagattaaatatcttctgggacacaactctgtcatgcttttgtataaatt 218  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3152133 ggaaatgtggggcacactgaggcttagttaacttgtctttgagctcctgtgagattaaatatcttctgggacacaactctgtcatgcttttgtataaatt 3152034  T
Q  219 atcaatgcaatttaaagaagagattccttgaagcatatgcactactgctcccaaaggtaaggtgagaaaactgaaaacaatgtcaataaaatcttcttgt 318  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3152033 atcagtgcaatttaaagaagagattccttgaagcatatgcactactgctcccaaaggtaaggtgagaaaactgaaaacaaagtcaataaaatcttcttgt 3151934  T
Q  319 gcttcagcaaatagaaactctctagttgattttcttaccattagtttcacaaccat 374  Q
    ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3151933 gcttcggtaaatagaaactctctagttgattttcttaccattagtttcacaaccat 3151878  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 200 - 317
Target Start/End: Complemental strand, 15381183 - 15381066
Alignment:
Q  200 tcatgcttttgtataaattatcaatgcaatttaaagaagagattccttgaagcatatgcactactgctcccaaaggtaaggtgagaaaactgaaaacaat 299  Q
    ||||||||||||||||||||||||||||  ||||  |||||| |||||||||||||||||  ||| |||| || || ||||| |||||||| |||||||     
T  15381183 tcatgcttttgtataaattatcaatgcagcttaacaaagagaatccttgaagcatatgcaacactcctcctaaggggaaggttagaaaactaaaaacaaa 15381084  T
Q  300 gtcaataaaatcttcttg 317  Q
    ||| |||||||| |||||    
T  15381083 gtcgataaaatcatcttg 15381066  T

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Target: chr7 (Bit Score: 79; Significance: 8e-37; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 192 - 354
Target Start/End: Complemental strand, 21200512 - 21200350
Alignment:
Q  192 caactctgtcatgcttttgtataaattatcaatgcaatttaaagaagagattccttgaagcatatgcactactgctcccaaaggtaaggtgagaaaactg 291  Q
    |||||| |||| |||||||||||||||||||||||| |||||||||||||  ||||||||||||||||  ||| |||||||||| || || |||||||||    
T  21200512 caactcggtcacgcttttgtataaattatcaatgcagtttaaagaagagaaaccttgaagcatatgcaacactcctcccaaagggaaagttagaaaactg 21200413  T
Q  292 aaaacaatgtcaataaaatcttcttgtgcttcagcaaatagaaactctctagttgattttctt 354  Q
    |||| || || ||||||||| |||  |||||||||||| | || ||||| |||||||||||||    
T  21200412 aaaataaagttaataaaatcatctcttgcttcagcaaacaaaatctctccagttgattttctt 21200350  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 204 - 312
Target Start/End: Complemental strand, 24285020 - 24284912
Alignment:
Q  204 gcttttgtataaattatcaatgcaatttaaagaagagattccttgaagcatatgcactactgctcccaaaggtaaggtgagaaaactgaaaacaatgtca 303  Q
    |||||| |||||||||||||||||  |||||||||||| |||||||||||||||||  ||| | ||||| || ||||| |||||||| |||| || ||||    
T  24285020 gcttttatataaattatcaatgcagcttaaagaagagaatccttgaagcatatgcaacactccccccaaggggaaggttagaaaactaaaaataaagtca 24284921  T
Q  304 ataaaatct 312  Q
    |||||||||    
T  24284920 ataaaatct 24284912  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 354
Target Start/End: Complemental strand, 21195266 - 21195104
Alignment:
Q  192 caactctgtcatgcttttgtataaattatcaatgcaatttaaagaagagattccttgaagcatatgcactactgctcccaaaggtaaggtgagaaaactg 291  Q
    |||||| |||| |||||||||||||||||| ||||  |||| ||||||||  |||| |||||||||||  ||| |||| || || |  || |||||||||    
T  21195266 caactcagtcaagcttttgtataaattatcgatgctgtttagagaagagaaaccttcaagcatatgcaacactcctcctaaggggagagttagaaaactg 21195167  T
Q  292 aaaacaatgtcaataaaatcttcttgtgcttcagcaaatagaaactctctagttgattttctt 354  Q
    |||| || || ||||||||| ||   |||||||||||| | ||  |||| |||||||||||||    
T  21195166 aaaataaagttaataaaatcatcgcctgcttcagcaaacaaaatatctccagttgattttctt 21195104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 369
Target Start/End: Complemental strand, 24239064 - 24238894
Alignment:
Q  199 gtcatgcttttgtataaattatcaatgcaatttaaagaagagattccttgaagcatatgcactactgctcccaaaggtaaggtgagaaaactgaaaacaa 298  Q
    ||||||||  |||||||||||||||||||  ||| |||||| | |||||||||||||||||  ||| |||| || || || ||||||||||| |||| ||    
T  24239064 gtcatgctggtgtataaattatcaatgcagcttatagaagaaaatccttgaagcatatgcaacactcctcctaaggggaaagtgagaaaactcaaaagaa 24238965  T
Q  299 tgtcaataaaatcttcttgtgcttcagcaaatagaaactctctagttgattttcttaccattagtttcaca 369  Q
     |||   ||||||||| |  ||||||||| | | || |||||| |||||| |||| |||| || |||||||    
T  24238964 agtccgcaaaatcttcctcagcttcagcatacaaaacctctcttgttgatcttctcaccagtactttcaca 24238894  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 295
Target Start/End: Original strand, 24158638 - 24158733
Alignment:
Q  200 tcatgcttttgtataaattatcaatgcaatttaaagaagagattccttgaagcatatgcactactgctcccaaaggtaaggtgagaaaactgaaaa 295  Q
    |||||||||  |||||| |||||||||| ||||||||||||| |||||  ||||| ||||  |||||||| | ||| || || |||||||||||||    
T  24158638 tcatgctttcatataaaatatcaatgcagtttaaagaagagaatccttctagcatttgcaacactgctcctagaggaaaagtcagaaaactgaaaa 24158733  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 334
Target Start/End: Original strand, 24231720 - 24231846
Alignment:
Q  208 ttgtataaattatcaatgcaatttaaagaagagattccttgaagcatatgcactactgctcccaaaggtaaggtgagaaaactgaaaacaatgtcaataa 307  Q
    ||||| || ||||||||||   ||||||| || | |||||||||||||||||  ||| |||| || || || || |||||||| ||||||| ||||||||    
T  24231720 ttgtacaagttatcaatgctgcttaaagacgaaaatccttgaagcatatgcaacactcctcctaagggaaatgttagaaaactaaaaacaaagtcaataa 24231819  T
Q  308 aatcttcttgtgcttcagcaaatagaa 334  Q
    |||| |||  ||||||| |||| ||||    
T  24231820 aatcatctcctgcttcaacaaacagaa 24231846  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 24121200 - 24121255
Alignment:
Q  192 caactctgtcatgcttttgtataaattatcaatgcaatttaaagaagagattcctt 247  Q
    |||||| ||||||||||| |||||| ||||||||||  |||||||||||| |||||    
T  24121200 caactcagtcatgcttttatataaaatatcaatgcagcttaaagaagagaatcctt 24121255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 199 - 374
Target Start/End: Original strand, 24145308 - 24145483
Alignment:
Q  199 gtcatgcttttgtataaattatcaatgcaatttaaagaagagattccttgaagcatatgcactactgctcccaaaggtaaggtgagaaaactgaaaacaa 298  Q
    |||| ||| ||||||||||||||||||||  ||| | |||||| ||||||  |  ||||||  |||||||| || || || ||||||||||| ||||| |    
T  24145308 gtcacgctcttgtataaattatcaatgcagcttacaaaagagaatccttggcgagtatgcaacactgctcctaaggggaaagtgagaaaactaaaaacga 24145407  T
Q  299 tgtcaataaaatcttcttgtgcttcagcaaatagaaactctctagttgattttcttaccattagtttcacaaccat 374  Q
     ||||   |||||||| | ||||||| |||| | || || | || |||||||||||  || || ||||||||||||    
T  24145408 agtcagcgaaatcttcctctgcttcaacaaacaaaatctgtttatttgattttcttctcagtactttcacaaccat 24145483  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 204 - 377
Target Start/End: Complemental strand, 10989740 - 10989565
Alignment:
Q  204 gcttttgtataaattatcaatgcaatttaaagaagagattccttgaagcatatgcactactgctcc--caaaggtaaggtgagaaaactgaaaacaatgt 301  Q
    |||| |||||||||||||||||||  |||||||||||| |||||||||||||  ||  ||| ||||   || || || || ||||||||||||| || ||    
T  10989740 gcttctgtataaattatcaatgcagcttaaagaagagaatccttgaagcatacacaacactcctcctataagggaaatgtaagaaaactgaaaagaaagt 10989641  T
Q  302 caataaaatcttcttgtgcttcagcaaatagaaactctctagttgattttcttaccattagtttcacaaccatctg 377  Q
    ||||||||||| |   | ||||| |||| | |||||||| |||||||||||||  || || |||||||| ||||||    
T  10989640 caataaaatctacccctccttcaacaaacaaaaactctccagttgattttctttgcaatactttcacaatcatctg 10989565  T

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