View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19231_low_1 (Length: 691)
Name: NF19231_low_1
Description: NF19231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19231_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 517; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 42 - 666
Target Start/End: Original strand, 43383301 - 43383943
Alignment:
| Q |
42 |
gaacaacattgctcgtacttgcactgaatgtggtaagatattctggtcatggaaggctctttttggtcatatgcgttgtcatcctgagcgtgaatggaga |
141 |
Q |
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| T |
43383301 |
gaacaacattgctcgtacttgcactgaatgtggtaagatattctggtcatggaaggctctttttggtcatatgcgttgtcatcctgagcgtgaatggaga |
43383400 |
T |
|
| Q |
142 |
ggcattaaccctcctcctaatttcagaagacaacaacttgttgtgactccagaagaacaggaaggtgctgcttctttgctcttacttgctaattcaaatc |
241 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43383401 |
ggcattaaccctccacctaatttcagaagacaacaacttgttgtgactccagaagaacaggaaggtgctgcttctttgctcttactttctaattcaaatc |
43383500 |
T |
|
| Q |
242 |
caaagaacaagaaagc---agcaaaatcaacaacaacggtgatggtcgatgagaatgatcagtttgtgtgttcatgttgtaacaaagtatttggatccca |
338 |
Q |
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| T |
43383501 |
caaagaacaagaaagcaaaagcaaaagcaacaacaacgg---tggtcgatgaggatgatcagtttgtgtgttcgtgttgtaacaaagtatttggatccca |
43383597 |
T |
|
| Q |
339 |
tcaggcacttggaggacatagggctagtcacaagaatgtcaagggctgtttcgccaat------acaacaataaccgcttcttctaattctactactgga |
432 |
Q |
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| T |
43383598 |
tcaggcacttggaggacacagggctagtcacaagaatgtcaagggctgtttcgccaatacaacaacaacaataaccgcttcttctaattctactactgga |
43383697 |
T |
|
| Q |
433 |
aggacattcatgacgcctcacgatgacacaatgactcgtggtggaaac------gtggaaggggaagcggttaataataatgagatgataaactgcatca |
526 |
Q |
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| T |
43383698 |
aggacgttcatgacgcctcacgatgacacaatgactcgtggtggaaacgtggaagtggaaggggaagcggttaataataatgagatgattaactgcatca |
43383797 |
T |
|
| Q |
527 |
tcggacacaagtgtagcatatgtttgagggtatttagcactggacaagcactcggtggtcataagaggtgtcattgggaaaaagtggaaccca------c |
620 |
Q |
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| T |
43383798 |
tcggacacaagtgtagcatatgtttgagggtatttagcactggacaagcactcggtggtcataagaggtgtcattgggaaaaagtggaacccaaaacacc |
43383897 |
T |
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| Q |
621 |
aacaccaacaccaacactaccatttgatttgaatttcccttttcca |
666 |
Q |
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| T |
43383898 |
aacaccaacaccaacactaccatttgatttgaatttcccttttcca |
43383943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 43 - 393
Target Start/End: Original strand, 25870023 - 25870382
Alignment:
| Q |
43 |
aacaacattgctcgtacttgcactgaatgtggtaagatattctggtcatggaaggctctttttggtcatatgcgttgtcatcctgagcgtgaatggagag |
142 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25870023 |
aacaacattgctcgtacttgcactgaatgtggtaagatattctggtcatggaaggctctttttggtcatatgcgttgtcatcctgagcgtcaatggagag |
25870122 |
T |
|
| Q |
143 |
gcattaaccctcctcctaatttcagaagacaacaacttg---ttgtgactccagaagaacaggaaggtgctgcttctttgctcttacttgctaattcaaa |
239 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
25870123 |
gcattaaccctcctcctaatttcagaagacaacaacaacaacttgtgactccagaagaacaggaaggtgctgcttctttgcttttacttgctaattcaaa |
25870222 |
T |
|
| Q |
240 |
tccaaagaacaagaa-agcagca--------aaatcaacaacaacggtgatggtcgatgagaatgatcagtttgtgtgttcatgttgtaacaaagtattt |
330 |
Q |
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| T |
25870223 |
tccaaagaacaagaacaagaacaagaacaagaaaacaacaacaacggtggtggatgatgag---gatcagtttgtgtgttcgtgttgcaacaaagtattt |
25870319 |
T |
|
| Q |
331 |
ggatcccatcaggcacttggaggacatagggctagtcacaagaatgtcaagggctgtttcgcc |
393 |
Q |
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| T |
25870320 |
ggatcccatcaggcacttggaggacacagggctagtcacaagaatgtcaagggctgtttcgcc |
25870382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 473 - 666
Target Start/End: Original strand, 25870423 - 25870613
Alignment:
| Q |
473 |
gtggaaacgtggaaggggaagcggttaataataatgaga-tgataa--actgcatcatcggacacaagtgtagcatatgtttgagggtatttagcactgg |
569 |
Q |
| |
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|||||||||| |||||||||| |||||||| |||| | | | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25870423 |
gtggaaacgttgaaggggaagaggttaatagtaataataataataatgactgcatcatcggacacaagtgtagcatatgtttgagggtatttagcactgg |
25870522 |
T |
|
| Q |
570 |
acaagcactcggtggtcataagaggtgtcattgggaaaaagtggaacccacaacaccaacaccaacactaccatttgatttgaatttcccttttcca |
666 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| |||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
25870523 |
acaagcactcggtggtcataagaggtgtcattgggataaaggggaaccca------cgacaccaacactaccatttgatttgaatttcccttttcca |
25870613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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