View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19231_low_2 (Length: 598)

Name: NF19231_low_2
Description: NF19231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19231_low_2
NF19231_low_2
[»] chr6 (4 HSPs)
chr6 (1-581)||(2774325-2774906)
chr6 (1-128)||(3057047-3057174)
chr6 (159-256)||(3056034-3056130)
chr6 (205-234)||(3055972-3056001)
[»] chr2 (5 HSPs)
chr2 (384-471)||(42347212-42347299)
chr2 (404-464)||(15322803-15322863)
chr2 (403-456)||(9225892-9225945)
chr2 (404-437)||(22465342-22465375)
chr2 (503-563)||(14133848-14133908)
[»] chr8 (1 HSPs)
chr8 (403-467)||(37591963-37592027)
[»] chr1 (4 HSPs)
chr1 (402-474)||(48855637-48855708)
chr1 (381-563)||(17492916-17493088)
chr1 (402-486)||(44125838-44125921)
chr1 (402-471)||(48258244-48258313)
[»] chr4 (2 HSPs)
chr4 (497-563)||(50765578-50765644)
chr4 (402-438)||(38308206-38308242)
[»] scaffold0012 (1 HSPs)
scaffold0012 (404-437)||(197777-197810)
[»] chr7 (1 HSPs)
chr7 (510-563)||(45663262-45663315)
[»] chr5 (2 HSPs)
chr5 (381-454)||(5672764-5672837)
chr5 (410-486)||(34349446-34349522)


Alignment Details
Target: chr6 (Bit Score: 542; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 1 - 581
Target Start/End: Original strand, 2774325 - 2774906
Alignment:
Q  1 tcaacttgttttttatcaatagaaattgaacttggtaggttagaatttacaatattcatgtaagagtgtaacaaatcgtttggttttagtataaggtgtg 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2774325 tcaacttgttttttatcaatagaaattgaacttggtacgttagaatttacaatattcatgtaagagtgtaacaaatcgtttggttttagtataagatgtg 2774424  T
Q  101 catggaatcgtaacaaacaaaagtaacacaaatgaatcacaaagtcaaatcggctaaacaaaacagttgaatcactaagcaagcatcctaaggcacacta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2774425 catggaatcgtaacaaacaaaagtaacacaaatgaatcacaaagtcaaatcggctaaacaaaacagttgaatcactaagcaagcatcctaaggcacacta 2774524  T
Q  201 agatatatttacccacgtaaaagatccttgatgg-atattctttgaattgatacatttttattttgtgggaggtctcaataacaactctaaacccaatta 299  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2774525 agatatatttacccacgtaaaagatccttgatgggatattctttgaattgatacatttttattttgtgggaggtctcaataacaactctaaacccaatta 2774624  T
Q  300 catggcatttgtttccaattagacaatttcaataaaaattgggttttccataacgtgggcttcaaatatgttagaacaacaaagattgttgtttacaccg 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2774625 catggcatttgtttccaattagacaatttcaataaaaattgggttttccataacgtgggcttcaaacatgttagaacaacaaagattgttgtttacaccg 2774724  T
Q  400 attgatttgctatcacacacctgaaaatgaccaaaataccttcaacagtagttaactaccgttcgctccaaaagaacaaattaagcaattaaatagagtt 499  Q
    |||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  2774725 attgatttgctattccacacctgaaaatgaccaaaataccttcaacggtagttaactaccgttcgctccaaaagaacaaattaagcaatgaaatacagtt 2774824  T
Q  500 gggggtattaaaggttattttcatgcgtgtgatagctggctttgaagtctaaagagcaatcttctaaaccaattatgaatgt 581  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2774825 gggggtattaaaggttattttcatgcgtgtgatagctggctttgaagtctaaagagcaatcttctaaaccaattatgaatgt 2774906  T

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Target: chr6; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 3057174 - 3057047
Alignment:
Q  1 tcaacttgttttttatcaatagaaattgaacttggtaggttagaatttacaatattcatgtaagagtgtaacaaatcgtttggttttagtataaggtgtg 100  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3057174 tcaacttgttttttctcaatagaaattgaacttggtacgttagaatttacaatattcatgtaagagtgtaacaaatcgtttggttttagtataaggtgtg 3057075  T
Q  101 catggaatcgtaacaaacaaaagtaaca 128  Q
    ||||||||||||||||||||||||||||    
T  3057074 catggaatcgtaacaaacaaaagtaaca 3057047  T

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Target: chr6; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 159 - 256
Target Start/End: Original strand, 3056034 - 3056130
Alignment:
Q  159 caaaacagttgaatcactaagcaagcatcctaaggcacactaagatatatttacccacgtaaaagatccttgat-ggatattctttgaattgatacatt 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3056034 caaaacagttgaatcactaagcaagcatcctaaggcacactaag--atatttacccacgtaaaagatccttgatgggatattctttgaattgatacatt 3056130  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 234
Target Start/End: Complemental strand, 3056001 - 3055972
Alignment:
Q  205 atatttacccacgtaaaagatccttgatgg 234  Q
    ||||||||||||||||||||||||||||||    
T  3056001 atatttacccacgtaaaagatccttgatgg 3055972  T

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Target: chr2 (Bit Score: 44; Significance: 9e-16; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 384 - 471
Target Start/End: Complemental strand, 42347299 - 42347212
Alignment:
Q  384 attgttgtttacaccgattgatttgctatcacacacctgaaaatgaccaaaataccttcaacagtagttaactaccgttcgctccaaa 471  Q
    ||||||||||||||  |  ||||||||||||||| |||| |||| | ||||||| |||||||||||||||| ||||||||||| ||||    
T  42347299 attgttgtttacactaaaagatttgctatcacactcctggaaataatcaaaataacttcaacagtagttaattaccgttcgcttcaaa 42347212  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 404 - 464
Target Start/End: Original strand, 15322803 - 15322863
Alignment:
Q  404 atttgctatcacacacctgaaaatgaccaaaataccttcaacagtagttaactaccgttcg 464  Q
    ||||||||||||||| || ||||||| |||||||| |||||| ||||||||||| ||||||    
T  15322803 atttgctatcacacatctaaaaatgatcaaaatactttcaacggtagttaactatcgttcg 15322863  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 456
Target Start/End: Original strand, 9225892 - 9225945
Alignment:
Q  403 gatttgctatcacacacctgaaaatgaccaaaataccttcaacagtagttaact 456  Q
    ||||| |||| ||||| |||||||||||||||| ||| | ||||||||||||||    
T  9225892 gatttcctattacacatctgaaaatgaccaaaaaacccttaacagtagttaact 9225945  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 437
Target Start/End: Complemental strand, 22465375 - 22465342
Alignment:
Q  404 atttgctatcacacacctgaaaatgaccaaaata 437  Q
    ||||| ||||||||||||||||||||||||||||    
T  22465375 atttgttatcacacacctgaaaatgaccaaaata 22465342  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 503 - 563
Target Start/End: Original strand, 14133848 - 14133908
Alignment:
Q  503 ggtattaaaggttattttcatgcgtgtgatagctggctttgaagtctaaagagcaatcttc 563  Q
    ||||||||| || |||||||   ||||||||||   |||||||||||||||||||||||||    
T  14133848 ggtattaaaagtcattttcagctgtgtgatagcaatctttgaagtctaaagagcaatcttc 14133908  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 403 - 467
Target Start/End: Complemental strand, 37592027 - 37591963
Alignment:
Q  403 gatttgctatcacacacctgaaaatgaccaaaataccttcaacagtagttaactaccgttcgctc 467  Q
    |||||||||||||||| || ||||||||||||||| |||||||  | |||||||| |||||||||    
T  37592027 gatttgctatcacacatctaaaaatgaccaaaatatcttcaacgatggttaactatcgttcgctc 37591963  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 474
Target Start/End: Original strand, 48855637 - 48855708
Alignment:
Q  402 tgatttgctatcacacacctgaaaatgaccaaaataccttcaacagtagttaactaccgttcgctccaaaaga 474  Q
    ||||||||||||||| || ||||||||||||||||||| | ||| ||| ||||||| |||||| |||||||||    
T  48855637 tgatttgctatcacatacatgaaaatgaccaaaatacc-taaacggtacttaactatcgttcgttccaaaaga 48855708  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 381 - 563
Target Start/End: Complemental strand, 17493088 - 17492916
Alignment:
Q  381 aagattgttgtttacaccgattgatttgctatcacacacctgaaaatgaccaaaataccttcaacagtagttaactaccgttcgctccaaaagaacaaat 480  Q
    |||||||||||||||||  |  |||||||||||||||||||  |||||||||||| |     || |    ||||||||||| ||||||||||||| ||||    
T  17493088 aagattgttgtttacactaaaagatttgctatcacacacctagaaatgaccaaaaga-----aaaa----ttaactaccgtacgctccaaaagaa-aaat 17492999  T
Q  481 taagcaattaaatagagttgggggtattaaaggttattttcatgcgtgtgatagctggctttgaagtctaaagagcaatcttc 563  Q
    ||| || | || |  | ||||||||||||||||| |||| || |  ||||||| |   |||||||||||||||| ||||||||    
T  17492998 taatcattgaactgtaattgggggtattaaaggtcatttccaagtatgtgataacattctttgaagtctaaagaacaatcttc 17492916  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 486
Target Start/End: Original strand, 44125838 - 44125921
Alignment:
Q  402 tgatttgctatcacacacctgaaaatgaccaaaataccttcaacagtagttaactaccgttcgctccaaaagaacaaattaagca 486  Q
    |||||||| ||||||||| || ||||||||||||||||  |||| ||||||||||||  |||||||||  |||  ||||||||||    
T  44125838 tgatttgccatcacacacatggaaatgaccaaaatacc-gcaacggtagttaactactattcgctccatgagagaaaattaagca 44125921  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 471
Target Start/End: Original strand, 48258244 - 48258313
Alignment:
Q  402 tgatttgctatcacacacctgaaaatgaccaaaataccttcaacagtagttaactaccgttcgctccaaa 471  Q
    |||||||||||||||||| | |||||||||||||||| || ||   || ||||||||  |||||||||||    
T  48258244 tgatttgctatcacacacttaaaaatgaccaaaatactttaaatgatatttaactacgattcgctccaaa 48258313  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 497 - 563
Target Start/End: Complemental strand, 50765644 - 50765578
Alignment:
Q  497 gttgggggtattaaaggttattttcatgcgtgtgatagctggctttgaagtctaaagagcaatcttc 563  Q
    ||||| |||||||||  | ||||||| | ||||||||||   |||||||||||||||||||||||||    
T  50765644 gttggaggtattaaaaatcattttcaagtgtgtgatagcaatctttgaagtctaaagagcaatcttc 50765578  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 402 - 438
Target Start/End: Complemental strand, 38308242 - 38308206
Alignment:
Q  402 tgatttgctatcacacacctgaaaatgaccaaaatac 438  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  38308242 tgatttgctatcactcacatgaaaatgaccaaaatac 38308206  T

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Target: scaffold0012 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 437
Target Start/End: Complemental strand, 197810 - 197777
Alignment:
Q  404 atttgctatcacacacctgaaaatgaccaaaata 437  Q
    ||||| ||||||||||||||||||||||||||||    
T  197810 atttgttatcacacacctgaaaatgaccaaaata 197777  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 563
Target Start/End: Original strand, 45663262 - 45663315
Alignment:
Q  510 aaggttattttcatgcgtgtgatagctggctttgaagtctaaagagcaatcttc 563  Q
    ||||| ||||||| | ||||||||||   |||||||||||||||||||||||||    
T  45663262 aaggtcattttcaagtgtgtgatagcaatctttgaagtctaaagagcaatcttc 45663315  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 454
Target Start/End: Complemental strand, 5672837 - 5672764
Alignment:
Q  381 aagattgttgtttacaccgattgatttgctatcacacacctgaaaatgaccaaaataccttcaacagtagttaa 454  Q
    ||||||||| |||||||  |  |||||| ||||||| | ||||||||||||||||||| | |||||| ||||||    
T  5672837 aagattgttatttacactaaaagatttgttatcacatatctgaaaatgaccaaaatacttccaacagcagttaa 5672764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 410 - 486
Target Start/End: Complemental strand, 34349522 - 34349446
Alignment:
Q  410 tatcacacacctgaaaatgaccaaaataccttcaacagtagttaactaccgttcgctccaaaagaacaaattaagca 486  Q
    ||||||| | |||||||||| |||| ||| ||||||  ||||||||||||||||| |  ||||||  ||||||||||    
T  34349522 tatcacatatctgaaaatgatcaaattactttcaacgatagttaactaccgttcgttttaaaagagaaaattaagca 34349446  T

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