View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19231_low_4 (Length: 296)
Name: NF19231_low_4
Description: NF19231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19231_low_4 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 7 - 296
Target Start/End: Original strand, 18934057 - 18934346
Alignment:
| Q |
7 |
acatcatcatcatcatcgagcttaaagtatttcttaaccaacggagttgcaacaatataaggtgacacacaattcacccgaataccaaaccgtccaagct |
106 |
Q |
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| T |
18934057 |
acatcatcatcatcatcgagcttaaaatatttcttaaccaacggagttgcaacaatataaggtgacacacaattcacccgaataccaaaccgtccaagct |
18934156 |
T |
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| Q |
107 |
cgatggccgtgttcctcatcagcccaacaacggcgtgctttgcacttgtgtaggcatgtggagcgacaccacctatgcttccacaaacactagctgtgtt |
206 |
Q |
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| T |
18934157 |
cgatggccgtgtttctcatcagcccaacaacggcgtgctttgcacttgtgtaggcatgtggagcgacaccacctatgcttccacaaacactagctgtgtt |
18934256 |
T |
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| Q |
207 |
aattatgctaccccgtcgagcggggatcattacccttgatgcatgttttgttccaagaaagacgccagtcaagtttactttaatcacatc |
296 |
Q |
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| T |
18934257 |
aattatgctaccccgtcgagcggggatcattacccttgatgcatgctttgttccaagaaagacaccagtcaagtttactttaatcacatc |
18934346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 17 - 296
Target Start/End: Original strand, 18929393 - 18929672
Alignment:
| Q |
17 |
catcatcgagcttaaagtatttcttaaccaacggagttgcaacaatataaggtgacacacaattcacccgaataccaaaccgtccaagctcgatggccgt |
116 |
Q |
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| T |
18929393 |
catcatcaagcttaaagaaatttgtaaccatcggagtcgcaagaaaataaggcgacacacaattcacccgaataccgaatggcccaagctcgatagccgt |
18929492 |
T |
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| Q |
117 |
gttcctcatcagcccaacaacggcgtgctttgcacttgtgtaggcatgtggagcgacaccacctatgcttccacaaacactagctgtgttaattatgcta |
216 |
Q |
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| T |
18929493 |
gtttctcatcagcccaacaacggcgtgctttgaacttgtgtaggcatgtggagcacaaccaccaatgcttccaccaacactagctgtgttaattatgcta |
18929592 |
T |
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| Q |
217 |
ccccgtcgagcggggatcattacccttgatgcatgttttgttccaagaaagacgccagtcaagtttactttaatcacatc |
296 |
Q |
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| T |
18929593 |
ccccgtcgagcagggatcattacccttgctgcatgttttgttccaagaaagacgccagtcaagtttactttaatcacatc |
18929672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 16 - 293
Target Start/End: Original strand, 18938750 - 18939027
Alignment:
| Q |
16 |
tcatcatcgagcttaaagtatttcttaaccaacggagttgcaacaatataaggtgacacacaattcacccgaataccaaaccgtccaagctcgatggccg |
115 |
Q |
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| T |
18938750 |
tcatcatcaagctttaagaagttcttagccatcggtgtggcgacaatataaggtgaaacacaattcacccgaatactgaacggtccaagttcgattgccg |
18938849 |
T |
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| Q |
116 |
tgttcctcatcagcccaacaacggcgtgctttgcacttgtgtaggcatgtggagcgacaccacctatgcttccacaaacactagctgtgttaattatgct |
215 |
Q |
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| T |
18938850 |
tgtttctcatcagccccaaaacagcatgctttgaacttgtgtaggcatgtgaagccataccacctatgcttccacaaacactagctgtgttaattatgct |
18938949 |
T |
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| Q |
216 |
accccgtcgagcggggatcattacccttgatgcatgttttgttccaagaaagacgccagtcaagtttactttaatcac |
293 |
Q |
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| T |
18938950 |
acctcgtcgagcggggatcattacccttgatgcgtgctttgttccaagaaagacaccaaccaagttaacattaatcac |
18939027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 14 - 281
Target Start/End: Original strand, 18946249 - 18946516
Alignment:
| Q |
14 |
catcatcatcgagcttaaagtatttcttaaccaacggagttgcaacaatataaggtgacacacaattcacccgaataccaaaccgtccaagctcgatggc |
113 |
Q |
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| T |
18946249 |
catcatcatcaagcttaaagaaattcttagccaacggagttccgacaacataaggtgacacacaattcactcgaataccgtacggtccaagctcgatggc |
18946348 |
T |
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| Q |
114 |
cgtgttcctcatcagcccaacaacggcgtgctttgcacttgtgtaggcatgtggagcgacaccacctatgcttccacaaacactagctgtgttaattatg |
213 |
Q |
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| T |
18946349 |
cgtatttttcattagcccaacaacggcgtgctttgaacttgtgtaggcatgtgaagccacaccacctatgcatccacaaacactagctgtgttaattatg |
18946448 |
T |
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| Q |
214 |
ctaccccgtcgagcggggatcattacccttgatgcatgttttgttccaagaaagacgccagtcaagtt |
281 |
Q |
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| T |
18946449 |
ctacctcgtcgaacgggggtcattaccctagcagcgtgttttgttccgagaaatacaccggtcaagtt |
18946516 |
T |
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