View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19232_high_11 (Length: 271)
Name: NF19232_high_11
Description: NF19232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19232_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 37 - 191
Target Start/End: Complemental strand, 28154553 - 28154399
Alignment:
| Q |
37 |
gtcctacctatcgagtattgattattgatttgaagattgcatgagatcgtgcgctcctattttggtcttgtgtggaaacaaaccatattgtagtaacata |
136 |
Q |
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| T |
28154553 |
gtcctacctatcgagtattgattattgatttgaagattgcatgagatcgtgcgctcctattttggtcttgtgtggaaacaaaccatattgtagtaacata |
28154454 |
T |
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| Q |
137 |
ctactagtattataaatatcactcatagaagtcaatgttatggctttggacctgt |
191 |
Q |
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| T |
28154453 |
ctactagtattataaatatcactcatagaagtcaatgttatggctttggacctgt |
28154399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 28154576 - 28154547
Alignment:
| Q |
1 |
tatagacaaagcacaaaacaagggtcctac |
30 |
Q |
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| T |
28154576 |
tatagacaaagcacaaaacaagggtcctac |
28154547 |
T |
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