View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19232_high_17 (Length: 213)
Name: NF19232_high_17
Description: NF19232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19232_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 51907848 - 51907654
Alignment:
| Q |
1 |
cctaattaccaataaaaagcagactaaaaaattcacaaactaaaattgggggaaatttttcacctctcaggtttcttcacttcagcagcttgctcaacag |
100 |
Q |
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| T |
51907848 |
cctaattaccaataaaaagcagactaaaaaattcacaaactaaaattgggggatatttttcacctctcaggtttcttcacttcagcagcttgctcaacag |
51907749 |
T |
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| Q |
101 |
catgagattctgaataaccaaattaaataaaatcaaatacgaaaattaacaagcacggttatttagaatttgatgataattattaattagggttt |
195 |
Q |
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| T |
51907748 |
catgagattctgaataaccaaattaaataaaatcaaatacgaaaattaacaagcacggttatttagattttgatgataattattaattagggttt |
51907654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 31 - 195
Target Start/End: Complemental strand, 6114078 - 6113914
Alignment:
| Q |
31 |
attcacaaactaaaattgggggaaatttttcacctctcaggtttcttcacttcagcagcttgctcaacagcatgagattctgaataaccaaattaaataa |
130 |
Q |
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||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||| || |||||||| |||||| |
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| T |
6114078 |
attcacaaactaaaattggggaaaaaatttcacctctcgggtttcttcacttcagcagcttgctcaacagcatgagaatctaaacaaccaaatcaaataa |
6113979 |
T |
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| Q |
131 |
aatcaaatacgaaaattaacaagcacggttatttagaatttgatgataattattaattagggttt |
195 |
Q |
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| T |
6113978 |
aatcaaaaacaaaaataaacaagcacggttatttagattttgatgataattactaattagggttt |
6113914 |
T |
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