View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19232_high_5 (Length: 377)
Name: NF19232_high_5
Description: NF19232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19232_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 34034601 - 34034961
Alignment:
| Q |
1 |
tacattggtattgttgacagcgtagaagctgaattaaaaggcatagagagtggactaaggttggcttgggattgtggctatcgagacgtgagttgtagaa |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34034601 |
tacattggtattgttgacagcgtacaagctgaattaaaaggcatagagagtggactaaggttggcttgggattgtggctatcgagacgtgagttgtagaa |
34034700 |
T |
|
| Q |
101 |
gtgattgttggaaagctatattattgagtcaagagtcaacatctcagcctcataaatatgttgagattacggatagtatcaaggagcttgtgtctagaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34034701 |
gtgattgttggaaagctatattattgagtcaagactcaacatctcagcctcataaatatgttgagattacggagagtatcaaggagcttgtgtctagaga |
34034800 |
T |
|
| Q |
201 |
ttggattgttttgttaaattggactgaaagagaaagcaaccaatgtgcggactttatggcgaaaatgggagcaaaaatcgaccaatatgcggattttatg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34034801 |
ttggattgttttgttaaattggactgaaagagaaagcaaccaatgtgcggattttatggcgaaaatgggagcaaaaatcgaccaatatgcggattttatg |
34034900 |
T |
|
| Q |
301 |
gcagaaatgggagcaattaccgtgggtagtgtaacaatgtttccaaagccactaccttact |
361 |
Q |
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| T |
34034901 |
gcagaaatgggagcaattaccgtgggtagtgtaacaatgtttccaaagccactaccttact |
34034961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 84 - 198
Target Start/End: Original strand, 45632693 - 45632807
Alignment:
| Q |
84 |
agacgtgagttgtagaagtgattgttggaaagctatattattgagtcaagagtcaacatctcagcctcataaatatgttgagattacggatagtatcaag |
183 |
Q |
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|||||||||||| |||||||||||| | | ||||||| |||| |||||| ||||||||||||||| ||||||||||||||| ||| |||||||||| |
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| T |
45632693 |
agacgtgagttgcagaagtgattgtatggaggctatatctttgattcaagactcaacatctcagcctaataaatatgttgagactacatatagtatcaaa |
45632792 |
T |
|
| Q |
184 |
gagcttgtgtctaga |
198 |
Q |
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|||||| |||||||| |
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| T |
45632793 |
gagcttatgtctaga |
45632807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 15 - 264
Target Start/End: Original strand, 34888767 - 34889016
Alignment:
| Q |
15 |
tgacagcgtagaagctgaattaaaaggcatagagagtggactaaggttggcttgggattgtggctatcgagacgtgagttgtagaagtgattgttggaaa |
114 |
Q |
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||||||| ||||||||||||||||||||||||||| |||||||| ||| |||||||| ||||||||||||||||||||| |||| ||||||||| | |
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| T |
34888767 |
tgacagcctagaagctgaattaaaaggcatagagattggactaatgttcgcttgggaacttggctatcgagacgtgagttgcagaattgattgttgacac |
34888866 |
T |
|
| Q |
115 |
gctatattattgagtcaagagtcaacatctcagcctcataaatatgttgagattacggatagtatcaaggagcttgtgtctagagattggattgttttgt |
214 |
Q |
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|||| | |||| |||||| ||||||||||| ||||||||||||||||||| | ||||||||||||||| || |||||||||| ||||||||||| | |
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| T |
34888867 |
gctacacgtttgattcaagactcaacatctcaatctcataaatatgttgagataaaagatagtatcaaggaggttatgtctagagactggattgttttct |
34888966 |
T |
|
| Q |
215 |
taaattggactgaaagagaaagcaaccaatgtgcggactttatggcgaaa |
264 |
Q |
| |
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| |||||| | | |||||||||||||||||||||| || |||||||| |
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|
| T |
34888967 |
cagtgtggactcacaaagaaagcaaccaatgtgcggacattttggcgaaa |
34889016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 84 - 198
Target Start/End: Complemental strand, 2658560 - 2658446
Alignment:
| Q |
84 |
agacgtgagttgtagaagtgattgttggaaagctatattattgagtcaagagtcaacatctcagcctcataaatatgttgagattacggatagtatcaag |
183 |
Q |
| |
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|||||||||||| |||||||||||| | | ||||||| |||| |||||| ||||||||||||||| ||||||||||||||| ||| |||||||||| |
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| T |
2658560 |
agacgtgagttgcagaagtgattgtatggaggctatatctttgattcaagactcaacatctcagcctaataaatatgttgagactacatatagtatcaaa |
2658461 |
T |
|
| Q |
184 |
gagcttgtgtctaga |
198 |
Q |
| |
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|||||| |||||||| |
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| T |
2658460 |
gagcttatgtctaga |
2658446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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