View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19232_low_1 (Length: 607)

Name: NF19232_low_1
Description: NF19232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19232_low_1
NF19232_low_1
[»] chr4 (8 HSPs)
chr4 (1-456)||(47730959-47731415)
chr4 (454-589)||(47731491-47731626)
chr4 (291-452)||(50823362-50823520)
chr4 (454-585)||(50823151-50823282)
chr4 (454-585)||(11376470-11376601)
chr4 (18-163)||(26334726-26334871)
chr4 (300-452)||(26334376-26334526)
chr4 (462-585)||(26334179-26334302)
[»] chr2 (3 HSPs)
chr2 (454-581)||(43709057-43709184)
chr2 (419-456)||(43709260-43709297)
chr2 (555-584)||(564570-564599)
[»] chr5 (5 HSPs)
chr5 (58-256)||(24873130-24873327)
chr5 (454-582)||(24873806-24873934)
chr5 (458-585)||(11052311-11052436)
chr5 (291-456)||(24873567-24873730)
chr5 (527-572)||(11106549-11106594)
[»] chr7 (2 HSPs)
chr7 (454-581)||(9083287-9083413)
chr7 (454-494)||(27154928-27154968)


Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Original strand, 47730959 - 47731415
Alignment:
Q  1 ttagcagtgtagatgcaatttttgttatgagtccatatgaatgcgtcctctacagaagcattgaaattgagttgcatattatttatgagatctatggcaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  47730959 ttagcagtgtagatgcaatttttgttatgagtccatatgaatgcgttctctgcagaagcattgaaattgagttgcatattatttatgaggtctatggcaa 47731058  T
Q  101 atgagggaagctgagtgtaaaggatgtgagcatgggggctgccagaagagaaaacatctttaaccgacagcaacatatcatgaatgtcaatgcagggagt 200  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||     
T  47731059 atgagggaagctgagtgtaaagaatgtgagcatgggggctgccagaagagaatacatctttaactgacagcaacatatcatgaatgtcaatgcagggagc 47731158  T
Q  201 aagggactctatgaaaccaagagaacatcaagggcatgaccagaaagaggaagaa-ctgacccattcatagaaatgtagctcattctgcatatgatgaga 299  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||    
T  47731159 aagggactctatgaaacgaagagaacaccaagggcatgaccagaaagaggaagaacctgacccgttcatagaaatgtagcccattctgcatatgatgaga 47731258  T
Q  300 cttttcttcattttgtgtgtgtgattgaacccattctaagcacttgtagcagcaagcaggatttaatcaatctgattttttctctaacgacgacgctata 399  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  47731259 cttttcttcattgtgtgtgtgtgattgaacccattctaagcacttgtggcagcaagcaggatttaatcaatctgattttttctctaacgacgacactata 47731358  T
Q  400 aattggatcaagaagagggtgatggggccttactatttcctttttgcagcaacaatt 456  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  47731359 aattggatcaagaacagggtgatggggccttactatttcctttttgcagcaacaatt 47731415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 454 - 589
Target Start/End: Original strand, 47731491 - 47731626
Alignment:
Q  454 attcaaggtatgattgataccctcaaagcttcttatcctttcatctctagtactactcatgaagcccaattcatcaaatggaacagcaataatcattctt 553  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  47731491 attcaaggtatggttgataccctcaaagcttcttatcctttcatctctagtactactcatgaagcccaattcatcaaatggaacaacaataatcattctt 47731590  T
Q  554 gtgtcatccttaatgttgatggaagttgccttagat 589  Q
    ||||||||||||||||||||||||||||||||||||    
T  47731591 gtgtcatccttaatgttgatggaagttgccttagat 47731626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 291 - 452
Target Start/End: Complemental strand, 50823520 - 50823362
Alignment:
Q  291 atgatgagacttttcttcattttgtgtgtgtgattgaacccattctaagcacttgtagcagcaagcaggatttaatcaatctgattttttctctaacgac 390  Q
    |||||||||||||||||||||  ||||| ||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||     
T  50823520 atgatgagacttttcttcatt--gtgtgcgtgattgcacccattctaagcacttgtggcagcaagcaggttttaatcaatctgattttttctctaatgag 50823423  T
Q  391 gacgctataaattggatcaagaagagggtgatggggccttactatttcctttttgcagcaac 452  Q
    || ||||||||||||||||||||  | ||||| |  ||||||  ||||||||||||||||||    
T  50823422 gatgctataaattggatcaagaatggagtgat-gacccttaccctttcctttttgcagcaac 50823362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 454 - 585
Target Start/End: Complemental strand, 50823282 - 50823151
Alignment:
Q  454 attcaaggtatgattgataccctcaaagcttcttatcctttcatctctagtactactcatgaagcccaattcatcaaatggaacagcaataatcattctt 553  Q
    |||||||||||| |||||||||| ||||||| | |||||| |||||||||||||||| |||||| ||||||||| || ||||||| ||||||||||||||    
T  50823282 attcaaggtatggttgataccctaaaagcttgtcatccttccatctctagtactactgatgaagaccaattcattaagtggaacaacaataatcattctt 50823183  T
Q  554 gtgtcatccttaatgttgatggaagttgcctt 585  Q
    ||||||| || |||||||||||||||||||||    
T  50823182 gtgtcattctaaatgttgatggaagttgcctt 50823151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 454 - 585
Target Start/End: Complemental strand, 11376601 - 11376470
Alignment:
Q  454 attcaaggtatgattgataccctcaaagcttcttatcctttcatctctagtactactcatgaagcccaattcatcaaatggaacagcaataatcattctt 553  Q
    |||||| ||||| |||||| |||||||||||||||||||| ||| |  ||||||| | |||||| | |||||||||| |||| || ||||||||||| ||    
T  11376601 attcaaagtatggttgatagcctcaaagcttcttatccttccatttgaagtactattgatgaagacaaattcatcaagtggagcaacaataatcattttt 11376502  T
Q  554 gtgtcatccttaatgttgatggaagttgcctt 585  Q
    |||||||| |||||||||||||||||||||||    
T  11376501 gtgtcatcgttaatgttgatggaagttgcctt 11376470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 26334726 - 26334871
Alignment:
Q  18 atttttgttatgagtccatatgaatgcgtcctctacagaagcattgaaattgagttgcatattatttatgagatctatggcaaatgagggaagctgagtg 117  Q
    |||||||||||||||| |||||||| | ||||||| ||||||||||||  || ||||||||||||||||||| |||||| ||||||| || |||||| ||    
T  26334726 atttttgttatgagtcgatatgaatacatcctctagagaagcattgaacctgtgttgcatattatttatgaggtctatgacaaatgaaggtagctgaatg 26334825  T
Q  118 taaaggatgtgagcatgggggctgccagaagagaaaacatctttaa 163  Q
    ||||| || || |||||| ||| |  | ||||||||||||||||||    
T  26334826 taaagaatttgtgcatggaggccgttaaaagagaaaacatctttaa 26334871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 300 - 452
Target Start/End: Complemental strand, 26334526 - 26334376
Alignment:
Q  300 cttttcttcattttgtgtgtgtgattgaacccattctaagcacttgtagcagcaagcaggatttaatcaatctgattttttctctaacgacgacgctata 399  Q
    ||||||||||  || |||||||||||| ||||||||||| ||||||| | || | ||   ||||||||||| |||  ||||||| || || |||||||||    
T  26334526 cttttcttca--ttatgtgtgtgattgcacccattctaaacacttgtggtagtaggccatatttaatcaatatgaccttttctccaatgaagacgctata 26334429  T
Q  400 aattggatcaagaagagggtgatggggccttactatttcctttttgcagcaac 452  Q
    |||||||||||||| ||||||||||| ||| ||| ||||||||||||||||||    
T  26334428 aattggatcaagaatagggtgatgggccctcactctttcctttttgcagcaac 26334376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 462 - 585
Target Start/End: Complemental strand, 26334302 - 26334179
Alignment:
Q  462 tatgattgataccctcaaagcttcttatcctttcatctctagtactactcatgaagcccaattcatcaaatggaacagcaataatcattcttgtgtcatc 561  Q
    |||| ||||||||||||||||||  ||||||| |||||||| ||||||  |||||  |||||||||||| ||||||| ||| |||| || ||||||||||    
T  26334302 tatggttgataccctcaaagcttgctatccttccatctctaatactaccgatgaaagccaattcatcaactggaacaacaacaatctttgttgtgtcatc 26334203  T
Q  562 cttaatgttgatggaagttgcctt 585  Q
    | |||||||||| |||||||||||    
T  26334202 cgtaatgttgattgaagttgcctt 26334179  T

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Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 454 - 581
Target Start/End: Complemental strand, 43709184 - 43709057
Alignment:
Q  454 attcaaggtatgattgataccctcaaagcttcttatcctttcatctctagtactactcatgaagcccaattcatcaaatggaacagcaataatcattctt 553  Q
    |||||||||||| ||||||||||| |||||| |||||||| ||||| |||||||||| |||||| ||||||||||||  |||||| ||||||||||| ||    
T  43709184 attcaaggtatggttgataccctctaagcttgttatccttccatctttagtactactgatgaagaccaattcatcaagcggaacaacaataatcattttt 43709085  T
Q  554 gtgtcatccttaatgttgatggaagttg 581  Q
    ||||||||||||||||||||||||||||    
T  43709084 gtgtcatccttaatgttgatggaagttg 43709057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 419 - 456
Target Start/End: Complemental strand, 43709297 - 43709260
Alignment:
Q  419 tgatggggccttactatttcctttttgcagcaacaatt 456  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  43709297 tgatgggcccttactatttcctttttgcagcaacaatt 43709260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 555 - 584
Target Start/End: Complemental strand, 564599 - 564570
Alignment:
Q  555 tgtcatccttaatgttgatggaagttgcct 584  Q
    ||||||||||||||||||||||||||||||    
T  564599 tgtcatccttaatgttgatggaagttgcct 564570  T

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Target: chr5 (Bit Score: 83; Significance: 5e-39; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 58 - 256
Target Start/End: Complemental strand, 24873327 - 24873130
Alignment:
Q  58 gcattgaaattgagttgcatattatttatgagatctatggcaaatgagggaagctgagtgtaaaggatgtgagcatgggggctgccagaagagaaaacat 157  Q
    ||||||||||||| |||||||||||| ||||| |||||||  || || || || ||||||||||||||||| |||| ||||||| |||||||||| ||||    
T  24873327 gcattgaaattgaattgcatattattgatgaggtctatggtgaaagaaggcagttgagtgtaaaggatgtgtgcat-ggggctggcagaagagaatacat 24873229  T
Q  158 ctttaaccgacagcaacatatcatgaatgtcaatgcagggagtaagggactctatgaaaccaagagaacatcaagggcatgaccagaaagaggaagaac 256  Q
    ||||||| ||||     | |||||||||||||||| |||| | ||||||| ||||||||||||||||||  |||||||| ||||| |||||||||||||    
T  24873228 ctttaactgacaattgtaaatcatgaatgtcaatgtagggtgcaagggaccctatgaaaccaagagaactccaagggcaagaccaaaaagaggaagaac 24873130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 454 - 582
Target Start/End: Original strand, 24873806 - 24873934
Alignment:
Q  454 attcaaggtatgattgataccctcaaagcttcttatcctttcatctctagtactactcatgaagcccaattcatcaaatggaacagcaataatcattctt 553  Q
    |||||||||||| |||||||||| ||||||| |||||||| || ||||| || |  | |||||| |||||||||||| |||||||  ||||||||| |||    
T  24873806 attcaaggtatggttgataccctaaaagcttgttatccttccacctctaatattggtgatgaagaccaattcatcaagtggaacaataataatcatgctt 24873905  T
Q  554 gtgtcatccttaatgttgatggaagttgc 582  Q
    |||||||||||||||||||||||||||||    
T  24873906 gtgtcatccttaatgttgatggaagttgc 24873934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 458 - 585
Target Start/End: Complemental strand, 11052436 - 11052311
Alignment:
Q  458 aaggtatgattgataccctcaaagcttcttatcctttcatctctagtactactcatgaagcccaattcatcaaatggaacagcaataatcattcttgtgt 557  Q
    |||||| | ||||||||||||||||||  |  |||| |||||||| | ||||  | |||| | |||||||||| ||||||| |||||||||||||||||     
T  11052436 aaggtacggttgataccctcaaagcttgct--ccttccatctctaatgctaccgaagaagactaattcatcaagtggaacaacaataatcattcttgtga 11052339  T
Q  558 catccttaatgttgatggaagttgcctt 585  Q
    ||||||||||||||||||||||||||||    
T  11052338 catccttaatgttgatggaagttgcctt 11052311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 291 - 456
Target Start/End: Original strand, 24873567 - 24873730
Alignment:
Q  291 atgatgagacttttcttcattttgtgtgtgtgattgaacccattctaagcacttgtagcagcaagcaggatttaatcaatctgattttttctctaacgac 390  Q
    |||||||||||||||||||||  | ||| ||||| | ||||||||||| || |||  ||| || |  | |||||||||| ||||||||| ||| ||  |     
T  24873567 atgatgagacttttcttcatt--gcgtgcgtgatagcacccattctaaacatttgcggcaacatgtcgaatttaatcaagctgattttt-ctccaattaa 24873663  T
Q  391 gacgctataaattggatcaagaa-gagggtgatggggccttactatttcctttttgcagcaacaatt 456  Q
    || ||||||||||||| |||| | | |||||||||| ||||||| ||||||||||||||||||||||    
T  24873664 gatgctataaattggaccaaggatgggggtgatgggcccttactctttcctttttgcagcaacaatt 24873730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 527 - 572
Target Start/End: Original strand, 11106549 - 11106594
Alignment:
Q  527 tcaaatggaacagcaataatcattcttgtgtcatccttaatgttga 572  Q
    |||||||||||| |||||| || |||||||||||||||||||||||    
T  11106549 tcaaatggaacaacaataaccactcttgtgtcatccttaatgttga 11106594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 454 - 581
Target Start/End: Complemental strand, 9083413 - 9083287
Alignment:
Q  454 attcaaggtatgattgataccctcaaagcttcttatcctttcatctctagtactactcatgaagcccaattcatcaaatggaacagcaataatcattctt 553  Q
    |||||||| ||| |||||||||||||||||| |||| ||| |||||||| |||||   |||||| | |||||||||| |||| || ||||||||||||||    
T  9083413 attcaaggcatggttgataccctcaaagcttgttatacttccatctctaatactatctatgaagac-aattcatcaagtggaccaacaataatcattctt 9083315  T
Q  554 gtgtcatccttaatgttgatggaagttg 581  Q
    |||||| |||||||||||||||||||||    
T  9083314 gtgtcaaccttaatgttgatggaagttg 9083287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 494
Target Start/End: Original strand, 27154928 - 27154968
Alignment:
Q  454 attcaaggtatgattgataccctcaaagcttcttatccttt 494  Q
    |||||||||||| |||| |||||||||||||||||||||||    
T  27154928 attcaaggtatggttgacaccctcaaagcttcttatccttt 27154968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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