View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19232_low_10 (Length: 291)
Name: NF19232_low_10
Description: NF19232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19232_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 54 - 273
Target Start/End: Original strand, 10076094 - 10076313
Alignment:
| Q |
54 |
gatgacttacttgaacaaagcagtcatgaaaatgaagacgaagcaaggatgcacccaaacgaggatctttcaatacagcagttgttattgctgttctaac |
153 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10076094 |
gatgacttacttgaacaaagcagtcttgaaaatgaagacgaagcaaagatgcacccaaacgaggatctttcaatacagcagttgttattgctgtcctaat |
10076193 |
T |
|
| Q |
154 |
ggtttgaacagcaagaggacacccatgcaacaaataaaaagagggtctcaactcactagaaggaccagggatcaaattagacacataagtagttgctgaa |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10076194 |
ggtttgaacagcaagaggacacccatgcaacaaataaaaagagggtctcaactcactagaaggaccagggatcaaattagacacataagtagttgctgaa |
10076293 |
T |
|
| Q |
254 |
ggagttacacttgaagctga |
273 |
Q |
| |
|
||| |||||||||||||||| |
|
|
| T |
10076294 |
ggaattacacttgaagctga |
10076313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 10084345 - 10084421
Alignment:
| Q |
58 |
acttacttgaacaaagcagtcatgaaaatgaagacgaagcaaggatgcacccaaacgaggatctttcaatacagcag |
134 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||| |||||||||||||| || ||| ||||| || | ||||||| |
|
|
| T |
10084345 |
acttacttgaacaaagcaatcatggaaatgaagacggagcaaggatgcacctaagcgacgatctctcgacacagcag |
10084421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 52344479 - 52344529
Alignment:
| Q |
60 |
ttacttgaacaaagcagtcatgaaaatgaagacgaagcaaggatgcaccca |
110 |
Q |
| |
|
||||||| |||||||||||||| ||||| ||||||||||||||||| |||| |
|
|
| T |
52344479 |
ttacttgcacaaagcagtcatggaaatggagacgaagcaaggatgctccca |
52344529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 9156102 - 9156147
Alignment:
| Q |
60 |
ttacttgaacaaagcagtcatgaaaatgaagacgaagcaaggatgc |
105 |
Q |
| |
|
||||||||||||||||||| |||||||| || |||||||||||||| |
|
|
| T |
9156102 |
ttacttgaacaaagcagtcctgaaaatggagtcgaagcaaggatgc |
9156147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University