View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19232_low_14 (Length: 241)

Name: NF19232_low_14
Description: NF19232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19232_low_14
NF19232_low_14
[»] chr4 (1 HSPs)
chr4 (16-232)||(20302199-20302405)
[»] chr5 (10 HSPs)
chr5 (16-227)||(30680034-30680249)
chr5 (25-227)||(30746455-30746661)
chr5 (16-227)||(30056978-30057193)
chr5 (16-227)||(30716212-30716427)
chr5 (87-235)||(30433207-30433356)
chr5 (129-232)||(30480723-30480826)
chr5 (16-105)||(30480634-30480723)
chr5 (95-227)||(30204077-30204218)
chr5 (165-205)||(40660718-40660758)
chr5 (92-174)||(30397080-30397162)


Alignment Details
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 20302405 - 20302199
Alignment:
Q  16 gatttctcattcatatcagccaaaatcatcacctcttatactttctgtggttcagctgaagcatcctctctctttaaggaaaagcagtggacacaacttg 115  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||    
T  20302405 gatttctcattcatatcatccaaaatcatcacctcttatagtttctgtggttcagctgaagcatcctcttgctttcaggaaaagcagtggacacaacttg 20302306  T
Q  116 atcaattaacattgtcctacacagacatggttggcattcagcagcattacacaacatatctgtcacaaacaaaatgaaataacatgagtgactcgactag 215  Q
    ||||||||| ||||||| ||||| |||||||||| |||||||||          ||||||||  ||||||| ||||||||||||||||||||||||||||    
T  20302305 atcaattaatattgtccgacacaaacatggttgggattcagcag----------catatctgatacaaacataatgaaataacatgagtgactcgactag 20302216  T
Q  216 aatcatgaaatacaatg 232  Q
    |||||||||||||||||    
T  20302215 aatcatgaaatacaatg 20302199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 30680249 - 30680034
Alignment:
Q  16 gatttctcattcatatcagccaaaatcatcacctcttatactttctgtggttcagctgaagcatcctctctctttaaggaaaagcagtggacacaac--- 112  Q
    ||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||  |||| || ||||||||||||||||||       
T  30680249 gatttctcattgatatcatccaaaatcatcacctcttatagtttctgtggttcagctgaagtatcctcttgctttcagcaaaagcagtggacacaacaca 30680150  T
Q  113 --ttgatcaattaacattgtcctacacagacatggttggcattcagcagcattacacaacatatctgtcacaaacaaaatgaaataacatgagtgactcg 210  Q
      ||||||||| |||||||||| ||||| |||||| ||  ||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||    
T  30680149 acttgatcaat-aacattgtccgacacaaacatggctgcgattcagcagcattccacaacatatctgacacaaacataatgaaataacatgagtgactcg 30680051  T
Q  211 actagaatcatgaaata 227  Q
    |||||||||||||||||    
T  30680050 actagaatcatgaaata 30680034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 25 - 227
Target Start/End: Original strand, 30746455 - 30746661
Alignment:
Q  25 ttcatatcagccaaaatcatcacctcttatactttctgtggttcagctgaagcatcctctctctttaaggaaaagcagtggacacaac-----ttgatca 119  Q
    ||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||  |||| |||||||||||||||||||||     |||||||    
T  30746455 ttcatatcatccaaaatcatcaccttttatagtttctgtggttcagctgaagcatcctcttgctttcaggaaaagcagtggacacaacacaacttgatca 30746554  T
Q  120 attaacattgtcctacacagacatggttggcattcagcagcattacacaacatatctgtcacaaacaaaatgaaataacatgagtgactcgactagaatc 219  Q
    || |||||||||| ||||| |||||| ||  ||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  30746555 at-aacattgtccgacacaaacatggctgtgattcagcagcattccacaacatatctgacacaaacataatgaaataacatgagtgactcgactagaatc 30746653  T
Q  220 atgaaata 227  Q
    ||||||||    
T  30746654 atgaaata 30746661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 16 - 227
Target Start/End: Original strand, 30056978 - 30057193
Alignment:
Q  16 gatttctcattcatatcagccaaaatcatcacctcttatactttctgtggttcagctgaagcatcctctctctttaaggaaaagcagtgg-----acaca 110  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||  |||| ||||||| ||||||     |||||    
T  30056978 gatttctcattcatatcatccaaaatcatcacctcttatagtttctgtggtttagctgaagcatcctcttgctttcaggaaaaacagtggacacaacaca 30057077  T
Q  111 acttgatcaattaacattgtcctacacagacatggttggcattcagcagcattacacaacatatctgtcacaaacaaaatgaaataacatgagtgactcg 210  Q
    |||||||||| ||||||||| | ||||| |||||| ||  ||| ||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||    
T  30057078 acttgatcaa-taacattgttcgacacaaacatggctgcgatttagcagcattccacaacatatctgacacaaacataatgaaataacatgagtgactcg 30057176  T
Q  211 actagaatcatgaaata 227  Q
    |||||||||||||||||    
T  30057177 actagaatcatgaaata 30057193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 30716427 - 30716212
Alignment:
Q  16 gatttctcattcatatcagccaaaatcatcacctcttatactttctgtggttcagctgaagcatcctctctctttaaggaaaagcagtggacacaac--- 112  Q
    |||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||  |||| |||||||||||||||||||||       
T  30716427 gatttctcattcatatcatccaaaatcatcacctcttatagattctgtggttcagctgaagcatcctcttgctttcaggaaaagcagtggacacaacaca 30716328  T
Q  113 --ttgatcaattaacattgtcctacacagacatggttggcattcagcagcattacacaacatatctgtcacaaacaaaatgaaataacatgagtgactcg 210  Q
      ||||| ||| || ||||||| ||||| |||||| ||  | ||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||    
T  30716327 acttgataaataaa-attgtccgacacaaacatggctgcaagtcagcagcattccacaacatatctgacacaaacataatgaaataacatgagtgactcg 30716229  T
Q  211 actagaatcatgaaata 227  Q
    |||||||||||||||||    
T  30716228 actagaatcatgaaata 30716212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 87 - 235
Target Start/End: Original strand, 30433207 - 30433356
Alignment:
Q  87 ctttaaggaaaagcagtggacacaacttgatcaattaacattgtcctacacagacatggttggcattcagcagcattacacaacatatctgtcacaaaca 186  Q
    |||| |||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||| ||||||||||||| ||||||||    
T  30433207 ctttcaggagaagcagtggacacaacttgatcaattaacattgtccaacacaaacatggttgggattcagcagcattccacaacatatctgacacaaaca 30433306  T
Q  187 aaatgaaataacatgagtgactcgactag-aatcatgaaatacaatgaca 235  Q
     |||||||||||||||||| ||||||||| ||  ||||||||||||||||    
T  30433307 taatgaaataacatgagtgtctcgactagaaaaaatgaaatacaatgaca 30433356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 129 - 232
Target Start/End: Original strand, 30480723 - 30480826
Alignment:
Q  129 gtcctacacagacatggttggcattcagcagcattacacaacatatctgtcacaaacaaaatgaaataacatgagtgactcgactagaatcatgaaatac 228  Q
    |||| ||||| | |||||||| ||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  30480723 gtccgacacaaatatggttgggattcagcagcattccacaacatatctgacacaaacataatgaaataacatgagtgactcgactagaatcatgaattac 30480822  T
Q  229 aatg 232  Q
    ||||    
T  30480823 aatg 30480826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 30480634 - 30480723
Alignment:
Q  16 gatttctcattcatatcagccaaaatcatcacctcttatactttctgtggttcagctgaagcatcctctctctttaaggaaaagcagtgg 105  Q
    |||||||||||||||||| || |||| ||||||||||||| ||||||||||||||||||||||||||||  |||| ||||||||||||||    
T  30480634 gatttctcattcatatcatccgaaattatcacctcttatagtttctgtggttcagctgaagcatcctcttgctttcaggaaaagcagtgg 30480723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 95 - 227
Target Start/End: Original strand, 30204077 - 30204218
Alignment:
Q  95 aaaagcagtggacacaacttgatcaattaacattgtcctacacagacatggttggcattcagcagcattac---------acaacatatctgtcacaaac 185  Q
    |||||||||||||| |||||||||||||||||||||   ||||| | || || || ||||||||||||| |         |||||||||||| |||||||    
T  30204077 aaaagcagtggacataacttgatcaattaacattgtttgacacaaaaatagtcgggattcagcagcattccggacgttccacaacatatctgacacaaac 30204176  T
Q  186 aaaatgaaataacatgagtgactcgactagaatcatgaaata 227  Q
    | ||| |||||||||||| |||||||||||||||||||||||    
T  30204177 ataataaaataacatgagcgactcgactagaatcatgaaata 30204218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 40660718 - 40660758
Alignment:
Q  165 cacaacatatctgtcacaaacaaaatgaaataacatgagtg 205  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  40660718 cacaacatatctgacacaaacataatgaaataacatgagtg 40660758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 174
Target Start/End: Original strand, 30397080 - 30397162
Alignment:
Q  92 aggaaaagcagtggacacaacttgatcaattaacattgtcctacacagacatggttggcattcagcagcattacacaacatat 174  Q
    |||||||||||||||  ||||||| | |||||||||||||  ||||| ||   || || ||||||||||||| ||||||||||    
T  30397080 aggaaaagcagtggatgcaacttggttaattaacattgtctgacacaaacgaagtcgggattcagcagcattccacaacatat 30397162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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