View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19232_low_15 (Length: 221)

Name: NF19232_low_15
Description: NF19232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19232_low_15
NF19232_low_15
[»] chr7 (3 HSPs)
chr7 (1-196)||(36348924-36349126)
chr7 (1-104)||(36360188-36360288)
chr7 (144-173)||(26253172-26253201)
[»] chr2 (3 HSPs)
chr2 (140-172)||(13027830-13027862)
chr2 (141-174)||(25084200-25084233)
chr2 (145-173)||(14958692-14958720)
[»] chr4 (2 HSPs)
chr4 (134-173)||(33975331-33975370)
chr4 (141-173)||(39767019-39767051)
[»] chr8 (1 HSPs)
chr8 (141-173)||(42309905-42309937)
[»] chr6 (1 HSPs)
chr6 (141-173)||(18153709-18153741)
[»] chr3 (3 HSPs)
chr3 (133-173)||(20915875-20915915)
chr3 (133-173)||(20924837-20924877)
chr3 (145-173)||(35317635-35317663)
[»] chr1 (1 HSPs)
chr1 (141-173)||(46917274-46917306)


Alignment Details
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 36348924 - 36349126
Alignment:
Q  1 ctgattggtttgagtagataaatattatcttgaggtgcaacaaaaactgcttcccctcct---gaagaacatactgcttcccaagtcttctcgaatgcct 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||    
T  36348924 ctgattggtttgagtagataaatattatcttgaggtgcaacaaaaactgcttcccctcctcctgaagaacatactgcttcccaagccttctcgaatgcct 36349023  T
Q  98 gaatattg----tgtatcccgcatgggaacaaatgagtatattatgatttgaattaaatatgtttttggtccctataaatgatgagtgtgttatatatac 193  Q
    |||||||     ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  36349024 gaatattaattatgtatcccgcatgggaacagatgagtatattatgatttgaattaaatatgtttttggtctctataaatgatgagtgtattatatatac 36349123  T
Q  194 ctg 196  Q
    |||    
T  36349124 ctg 36349126  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 36360188 - 36360288
Alignment:
Q  1 ctgattggtttgagtagataaatattatcttgaggtgcaacaaaaactgcttcccctcctgaagaacatactgcttcccaagtcttctcgaatgcctgaa 100  Q
    ||||||||||||||||||||| ||| |||||||||||| || ||||||| || |   ||||| ||||||||| ||||||||| ||||| |||||||||||    
T  36360188 ctgattggtttgagtagataattataatcttgaggtgccactaaaactgattgc---cctgacgaacatactacttcccaagccttcttgaatgcctgaa 36360284  T
Q  101 tatt 104  Q
    ||||    
T  36360285 tatt 36360288  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 173
Target Start/End: Original strand, 26253172 - 26253201
Alignment:
Q  144 gaattaaatatgtttttggtccctataaat 173  Q
    ||||||||||||||||||||||||||||||    
T  26253172 gaattaaatatgtttttggtccctataaat 26253201  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 172
Target Start/End: Complemental strand, 13027862 - 13027830
Alignment:
Q  140 atttgaattaaatatgtttttggtccctataaa 172  Q
    |||||||||||||||||||||||||||||||||    
T  13027862 atttgaattaaatatgtttttggtccctataaa 13027830  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 174
Target Start/End: Complemental strand, 25084233 - 25084200
Alignment:
Q  141 tttgaattaaatatgtttttggtccctataaatg 174  Q
    ||||| ||||||||||||||||||||||||||||    
T  25084233 tttgagttaaatatgtttttggtccctataaatg 25084200  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 173
Target Start/End: Complemental strand, 14958720 - 14958692
Alignment:
Q  145 aattaaatatgtttttggtccctataaat 173  Q
    |||||||||||||||||||||||||||||    
T  14958720 aattaaatatgtttttggtccctataaat 14958692  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 173
Target Start/End: Complemental strand, 33975370 - 33975331
Alignment:
Q  134 attatgatttgaattaaatatgtttttggtccctataaat 173  Q
    |||||||||||  |||||||||||||||||||||||||||    
T  33975370 attatgatttgggttaaatatgtttttggtccctataaat 33975331  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 173
Target Start/End: Complemental strand, 39767051 - 39767019
Alignment:
Q  141 tttgaattaaatatgtttttggtccctataaat 173  Q
    ||||| |||||||||||||||||||||||||||    
T  39767051 tttgagttaaatatgtttttggtccctataaat 39767019  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 173
Target Start/End: Complemental strand, 42309937 - 42309905
Alignment:
Q  141 tttgaattaaatatgtttttggtccctataaat 173  Q
    |||| ||||||||||||||||||||||||||||    
T  42309937 tttggattaaatatgtttttggtccctataaat 42309905  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 173
Target Start/End: Original strand, 18153709 - 18153741
Alignment:
Q  141 tttgaattaaatatgtttttggtccctataaat 173  Q
    ||||| |||||||||||||||||||||||||||    
T  18153709 tttgagttaaatatgtttttggtccctataaat 18153741  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 20915915 - 20915875
Alignment:
Q  133 tattatgatttgaattaaatatgtttttggtccctataaat 173  Q
    |||||| |||||  |||||||||||||||||||||||||||    
T  20915915 tattattatttgggttaaatatgtttttggtccctataaat 20915875  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 20924877 - 20924837
Alignment:
Q  133 tattatgatttgaattaaatatgtttttggtccctataaat 173  Q
    |||||| |||||  |||||||||||||||||||||||||||    
T  20924877 tattattatttgggttaaatatgtttttggtccctataaat 20924837  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 173
Target Start/End: Complemental strand, 35317663 - 35317635
Alignment:
Q  145 aattaaatatgtttttggtccctataaat 173  Q
    |||||||||||||||||||||||||||||    
T  35317663 aattaaatatgtttttggtccctataaat 35317635  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 173
Target Start/End: Original strand, 46917274 - 46917306
Alignment:
Q  141 tttgaattaaatatgtttttggtccctataaat 173  Q
    ||||| |||||||||||||||||||||||||||    
T  46917274 tttgagttaaatatgtttttggtccctataaat 46917306  T

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