View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19232_low_3 (Length: 460)
Name: NF19232_low_3
Description: NF19232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19232_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 52132892 - 52133335
Alignment:
| Q |
1 |
cagaaaatgatttctcaatcgaacttgacgtctttcaagaacatcatctttttaatttgttttgtaggtttcttttggttgctgcttggtgttgagtgta |
100 |
Q |
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| T |
52132892 |
cagaaaatgatttcacatccgaacttgacgtctttaatgaacatcatctttttaatttgttttttaggtttcttttggttgctgcttggtgttgagtgta |
52132991 |
T |
|
| Q |
101 |
aaagagaagaaattattaaagagcagttgaatctgaatcaggtttattaaatgactatcttcaacctcaaatttttaaagtagggtgaaatttcattcaa |
200 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
52132992 |
aaagagaagaaattattgaagagcagttgaatctgaatcaggtttattaaatgactatcttcaacctcaaatttttaaaataaggtgaaatttcattcaa |
52133091 |
T |
|
| Q |
201 |
atttagttggcgtc-nnnnnnncttgagtattgaaatcttgatgagatagctaggtaaagttagtccaag-nnnnnnntgccgctcaagttatagatttt |
298 |
Q |
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| T |
52133092 |
atttagttggcgtcttttttttcatgagtattgaaatcttgatgagatagctaggtaaagttagtccaagaaaaaaaatggcgctcaagttatagatttt |
52133191 |
T |
|
| Q |
299 |
ctttaaactatgggttctcttggttttca-aattcattgtctcattcctctctatttatatctacctctatatagagacgtgtttggtgatttttctgca |
397 |
Q |
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||||||| ||| ||||||||||||| ||| || | | ||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||| |
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| T |
52133192 |
ctttaaattatcggttctcttggttctcagaaataactgtctcattcctctctatttatatctatctctatatagagatgtgtttgatgatttttctgca |
52133291 |
T |
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| Q |
398 |
gttgtgttgaatttagatgcagattgtaaaagatgatgcttcta |
441 |
Q |
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| T |
52133292 |
gctgtgttgaatttagatgcagattgtaaatgatgatgcttcta |
52133335 |
T |
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