View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19232_low_6 (Length: 362)

Name: NF19232_low_6
Description: NF19232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19232_low_6
NF19232_low_6
[»] chr8 (7 HSPs)
chr8 (16-296)||(6412079-6412359)
chr8 (16-263)||(6392939-6393185)
chr8 (150-360)||(6373157-6373367)
chr8 (149-256)||(6365493-6365599)
chr8 (170-255)||(7463185-7463269)
chr8 (170-257)||(6356084-6356170)
chr8 (166-226)||(6373607-6373667)


Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 16 - 296
Target Start/End: Original strand, 6412079 - 6412359
Alignment:
Q  16 cagaagtgtccaacaaggtaggacgaacggtatcaccttcattctcgacaacagtattaccaccaataactttgtagttcaatgcattctttttcatcaa 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6412079 cagaagtgtccaacaaggtaggacgaacggtatcaccttcattctcaacaacagtattaccaccaataactttgtagttcaatgcattctttttcatcaa 6412178  T
Q  116 aaccacagttcccttcagctttgtgaccatgttcaatgaagtcatctttgatgcttaaatgtattacactatctttggcaaatgaaagaaatgtttgtgt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6412179 aaccacagttcccttcagctttgtgaccatgttcaatgaagtcatctttgatgcttaaatgtattacactatctttggctaatgaaagaaatgtttgtgt 6412278  T
Q  216 cttttaaccatgggggatgcttagtatttatagtacttgatgggatcacaaggttagttcaaaaaagataaactattcttt 296  Q
    ||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6412279 cttgtaaccttgtgggatgcttagtatttatagtacttgatgggatcacaaggttagttcaaaaaagataaaccattcttt 6412359  T

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Target: chr8; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 263
Target Start/End: Original strand, 6392939 - 6393185
Alignment:
Q  16 cagaagtgtccaacaaggtaggacgaacggtatcaccttcattctcgacaacagtattaccaccaataactttgtagttcaatgcattctttttcatcaa 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6392939 cagaagtgtccaacaaggtaggacgaacggtatcaccttcattctcaacaacagtattaccaccaataactttgtagttcaatgcattctttttcatcaa 6393038  T
Q  116 aaccacagttcccttcagctttgtgaccatgttcaatgaagtcatctttgatgcttaaatgtattacactatctttggcaaatgaaagaaatgtttgtgt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6393039 aaccacagttcccttcagctttgtgaccatgttcaatgaagtcatctttgatgcttaaatgtattacactatctttggctaatgaaagaaatgtttgtgt 6393138  T
Q  216 cttttaaccatgggggatgcttagtatttatagtacttgatgggatca 263  Q
    ||| ||||||| |||||||||| ||||||||| |||||||||||||||    
T  6393139 cttgtaaccat-ggggatgcttggtatttatactacttgatgggatca 6393185  T

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Target: chr8; HSP #3
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 150 - 360
Target Start/End: Original strand, 6373157 - 6373367
Alignment:
Q  150 aatgaagtcatctttgatgcttaaatgtattacactatctttggcaaatgaaagaaatgtttgtgtcttttaaccatgggggatgcttagtatttatagt 249  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||    
T  6373157 aatgaagtcatctttgatgcttaaatgtattacactatctttgtcaaatgaaagaaatgtttgtgtcttgtaaccattggggatgcttactatttatagt 6373256  T
Q  250 acttgatgggatcacaaggttagttcaaaaaagataaactattctttgatacacagctgttaacgatatcatattgagaaagacgccaattattttacct 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6373257 acttgatgggatcacaaggttagttcaaaaaagataaactattctttgatacacagctgttcacgatatcatattgagaaagacgccaattattttacct 6373356  T
Q  350 atgctactact 360  Q
    ||  |||||||    
T  6373357 attttactact 6373367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 149 - 256
Target Start/End: Original strand, 6365493 - 6365599
Alignment:
Q  149 caatgaagtcatctttgatgcttaaatgtattacactatctttggcaaatgaaagaaatgtttgtgtcttttaaccatgggggatgcttagtatttatag 248  Q
    ||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||| | |||||| || | ||||  |||||||||||||||||||||    
T  6365493 caatgaactcatctttaatgcttaaatgtattacactatctttggtaaatgaaagaaaagcttgtgttttgttacca-aggggatgcttagtatttatag 6365591  T
Q  249 tacttgat 256  Q
    || |||||    
T  6365592 tagttgat 6365599  T

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Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 170 - 255
Target Start/End: Original strand, 7463185 - 7463269
Alignment:
Q  170 ttaaatgtattacactatctttggcaaatgaaagaaatgtttgtgtcttttaaccatgggggatgcttagtatttatagtacttga 255  Q
    |||||| ||||||||||| ||||| ||||||||||||||  |||||||| |||||||||||| |||||||||| ||||||| ||||    
T  7463185 ttaaatatattacactatatttggtaaatgaaagaaatgcctgtgtcttgtaaccatggggg-tgcttagtatctatagtagttga 7463269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 170 - 257
Target Start/End: Original strand, 6356084 - 6356170
Alignment:
Q  170 ttaaatgtattacactatctttggcaaatgaaagaaatgtttgtgtcttttaaccatgggggatgcttagtatttatagtacttgatg 257  Q
    |||||||||||||||||| | ||| |||||||||||| | ||||||||| ||||||| |||| || ||||||||||||||| ||||||    
T  6356084 ttaaatgtattacactatatatggtaaatgaaagaaaggcttgtgtcttgtaaccatagggg-tggttagtatttatagtagttgatg 6356170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 6373607 - 6373667
Alignment:
Q  166 atgcttaaatgtattacactatctttggcaaatgaaagaaatgtttgtgtcttttaaccat 226  Q
    ||||||||| |||||||| |||||||||| ||||||||||| | |||||||||||||||||    
T  6373607 atgcttaaacgtattacaatatctttggctaatgaaagaaaagcttgtgtcttttaaccat 6373667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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