View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19232_low_7 (Length: 360)

Name: NF19232_low_7
Description: NF19232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19232_low_7
NF19232_low_7
[»] chr8 (4 HSPs)
chr8 (19-352)||(21236095-21236428)
chr8 (252-293)||(17642950-17642991)
chr8 (246-294)||(17635665-17635713)
chr8 (252-292)||(32151969-32152009)
[»] chr4 (6 HSPs)
chr4 (165-352)||(571271-571458)
chr4 (246-293)||(55907684-55907731)
chr4 (244-294)||(553758-553808)
chr4 (251-285)||(1547717-1547751)
chr4 (247-293)||(3437630-3437676)
chr4 (258-352)||(7225182-7225275)
[»] chr1 (1 HSPs)
chr1 (244-352)||(7555139-7555247)
[»] chr2 (1 HSPs)
chr2 (246-293)||(1036620-1036667)
[»] chr6 (7 HSPs)
chr6 (244-293)||(7132305-7132354)
chr6 (244-293)||(7135228-7135277)
chr6 (244-293)||(7138151-7138200)
chr6 (253-291)||(6395539-6395577)
chr6 (244-293)||(7993556-7993605)
chr6 (229-293)||(6417092-6417156)
chr6 (235-291)||(6427183-6427239)
[»] chr5 (1 HSPs)
chr5 (249-294)||(20477452-20477497)
[»] chr7 (1 HSPs)
chr7 (246-293)||(10615713-10615760)


Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 19 - 352
Target Start/End: Complemental strand, 21236428 - 21236095
Alignment:
Q  19 ctatcaccaaccgtattcgattctctctcaccatccgtaaagaaacacgtcctttcctcactcccatcttccatagatttcttaatctcacctcgctcga 118  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  21236428 ctatcaccaacagtattcgattctctctcaccatccgtaaagaaacacgtcctttcctcactcccatcttccatagatttcctaatctcacatcgctcga 21236329  T
Q  119 cctctcgcgatttcgtggtaaccacaaggttgaccgcaacactcttctcactgaaatctcatcttttccattgaacatcacatcgctcaatctcgccaac 218  Q
    |||||| ||||||||||||||| ||| |||||||||||||||| |||||||||||||||||| || ||||||||||||||||| ||||||| |||| |||    
T  21236328 cctctcacgatttcgtggtaactacagggttgaccgcaacacttttctcactgaaatctcatgttatccattgaacatcacattgctcaatttcgctaac 21236229  T
Q  219 agcgccttgattcccttaaacgggctgcgagcattctcccaaaatattacaactttgacatctctcaattgttcctacaaggattctatcagtaccaccg 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21236228 agcgccttgattcccttaaacgggctgcgagcattctcccaaaatactacaactttgacatctctcaattgttcctacaaggattctatcagtaccaccg 21236129  T
Q  319 acttgttgctcatctcggactgtttccctttgct 352  Q
    ||| |||||||||||||||||||||| |||||||    
T  21236128 actagttgctcatctcggactgtttctctttgct 21236095  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 293
Target Start/End: Original strand, 17642950 - 17642991
Alignment:
Q  252 ttctcccaaaatattacaactttgacatctctcaattgttcc 293  Q
    |||||||| ||||||||||||||||| ||||||| |||||||    
T  17642950 ttctcccagaatattacaactttgacctctctcacttgttcc 17642991  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 17635665 - 17635713
Alignment:
Q  246 cgagcattctcccaaaatattacaactttgacatctctcaattgttcct 294  Q
    ||||| |||||||  ||||||||||||||||| ||||||| ||||||||    
T  17635665 cgagctttctcccggaatattacaactttgacctctctcacttgttcct 17635713  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 32152009 - 32151969
Alignment:
Q  252 ttctcccaaaatattacaactttgacatctctcaattgttc 292  Q
    ||||||||||| |||||||||||||| ||||||| ||||||    
T  32152009 ttctcccaaaacattacaactttgacctctctcacttgttc 32151969  T

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Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 165 - 352
Target Start/End: Complemental strand, 571458 - 571271
Alignment:
Q  165 ctcactgaaatctcatcttttccattgaacatcacatcgctcaatctcgccaacagcgccttgattcccttaaacgggctgcgagcattctcccaaaata 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  571458 ctcactgaaatctcatcttttccattgaacatcacatcgctcaatctcgccaacagcgccttgattcccttaaacgggctgcgagcattctcccaaaata 571359  T
Q  265 ttacaactttgacatctctcaattgttcctacaaggattctatcagtaccaccgacttgttgctcatctcggactgtttccctttgct 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  571358 ttacaactttgacatctctcaattgttcctacaaggattctatcagtaccaccgacttgttgctcatctcggactgtttccctttgct 571271  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 246 - 293
Target Start/End: Original strand, 55907684 - 55907731
Alignment:
Q  246 cgagcattctcccaaaatattacaactttgacatctctcaattgttcc 293  Q
    ||||| |||||||||||||||||||||||||  ||||||| |||||||    
T  55907684 cgagctttctcccaaaatattacaactttgaattctctcatttgttcc 55907731  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 553808 - 553758
Alignment:
Q  244 tgcgagcattctcccaaaatattacaactttgacatctctcaattgttcct 294  Q
    ||||||| ||||||||||| |||||||||||||| |||||||  |||||||    
T  553808 tgcgagctttctcccaaaacattacaactttgacctctctcacctgttcct 553758  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 285
Target Start/End: Original strand, 1547717 - 1547751
Alignment:
Q  251 attctcccaaaatattacaactttgacatctctca 285  Q
    |||||||||||| ||||||||||||||||||||||    
T  1547717 attctcccaaaacattacaactttgacatctctca 1547751  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 293
Target Start/End: Original strand, 3437630 - 3437676
Alignment:
Q  247 gagcattctcccaaaatattacaactttgacatctctcaattgttcc 293  Q
    |||| ||||||||||| |||||||||||||| ||||||| |||||||    
T  3437630 gagctttctcccaaaagattacaactttgacctctctcagttgttcc 3437676  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 352
Target Start/End: Original strand, 7225182 - 7225275
Alignment:
Q  258 caaaatattacaactttgacatctctcaattgttcctacaaggattctatcagtaccaccgacttgttgctcatctcggactgtttccctttgct 352  Q
    |||||||||||||||||||| |||||||  |||||| |||   ||||| ||| || ||| ||| |||| |||||| |||| ||||||||||||||    
T  7225182 caaaatattacaactttgacctctctcacatgttcc-acatttattctgtcactagcactgacatgttcctcatcgcggattgtttccctttgct 7225275  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 244 - 352
Target Start/End: Complemental strand, 7555247 - 7555139
Alignment:
Q  244 tgcgagcattctcccaaaatattacaactttgacatctctcaattgttcctacaaggattctatcagtaccaccgacttgttgctcatctcggactgttt 343  Q
    ||||||| ||||||||||||||||||||||| || || |||| ||||||| | | ||||||||||| || ||  |||||||| |||||  | || |||||    
T  7555247 tgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgttt 7555148  T
Q  344 ccctttgct 352  Q
    |||||||||    
T  7555147 ccctttgct 7555139  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 293
Target Start/End: Original strand, 1036620 - 1036667
Alignment:
Q  246 cgagcattctcccaaaatattacaactttgacatctctcaattgttcc 293  Q
    ||||| |||||||||||||||||||||||||| ||||||| |||||||    
T  1036620 cgagctttctcccaaaatattacaactttgacttctctcatttgttcc 1036667  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 7132354 - 7132305
Alignment:
Q  244 tgcgagcattctcccaaaatattacaactttgacatctctcaattgttcc 293  Q
    ||||||| ||||||||||| |||||||||||| |||||||| ||||||||    
T  7132354 tgcgagctttctcccaaaacattacaactttggcatctctcgattgttcc 7132305  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 7135277 - 7135228
Alignment:
Q  244 tgcgagcattctcccaaaatattacaactttgacatctctcaattgttcc 293  Q
    ||||||| ||||||||||| |||||||||||| |||||||| ||||||||    
T  7135277 tgcgagctttctcccaaaacattacaactttggcatctctcgattgttcc 7135228  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 7138200 - 7138151
Alignment:
Q  244 tgcgagcattctcccaaaatattacaactttgacatctctcaattgttcc 293  Q
    ||||||| ||||||||||| |||||||||||| |||||||| ||||||||    
T  7138200 tgcgagctttctcccaaaacattacaactttggcatctctcgattgttcc 7138151  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 291
Target Start/End: Complemental strand, 6395577 - 6395539
Alignment:
Q  253 tctcccaaaatattacaactttgacatctctcaattgtt 291  Q
    ||||||||||||||||||||||||| ||||||| |||||    
T  6395577 tctcccaaaatattacaactttgacctctctcagttgtt 6395539  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Original strand, 7993556 - 7993605
Alignment:
Q  244 tgcgagcattctcccaaaatattacaactttgacatctctcaattgttcc 293  Q
    ||||||||||  ||||||| ||||||| |||||| |||||||||||||||    
T  7993556 tgcgagcatttgcccaaaacattacaattttgacctctctcaattgttcc 7993605  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 293
Target Start/End: Complemental strand, 6417156 - 6417092
Alignment:
Q  229 ttcccttaaacgggctgcgagcattctcccaaaatattacaactttgacatctctcaattgttcc 293  Q
    ||||| |||| ||| | ||||| ||||||||||| | |||||||||||| ||||||| |||||||    
T  6417156 ttcccgtaaatgggttacgagctttctcccaaaagaatacaactttgacctctctcacttgttcc 6417092  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 291
Target Start/End: Complemental strand, 6427239 - 6427183
Alignment:
Q  235 taaacgggctgcgagcattctcccaaaatattacaactttgacatctctcaattgtt 291  Q
    |||||||| ||| ||  |||||||||||||||||||||||||| | ||||| |||||    
T  6427239 taaacgggttgcaagttttctcccaaaatattacaactttgacctttctcacttgtt 6427183  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 294
Target Start/End: Original strand, 20477452 - 20477497
Alignment:
Q  249 gcattctcccaaaatattacaactttgacatctctcaattgttcct 294  Q
    ||||||||||||||||||| ||||||||| ||||||| ||||||||    
T  20477452 gcattctcccaaaatattaaaactttgacctctctcagttgttcct 20477497  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 246 - 293
Target Start/End: Complemental strand, 10615760 - 10615713
Alignment:
Q  246 cgagcattctcccaaaatattacaactttgacatctctcaattgttcc 293  Q
    ||||| ||||||||||| |||||||||||||| ||||||| |||||||    
T  10615760 cgagctttctcccaaaagattacaactttgacctctctcacttgttcc 10615713  T

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