View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19233_high_11 (Length: 271)
Name: NF19233_high_11
Description: NF19233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19233_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 6207199 - 6206960
Alignment:
| Q |
16 |
gaagattataccactacctatttaaatctcccagaagttcaaaaggctcttcatgttaaacccataaaatggtctcattgcaggtacacactaaaataag |
115 |
Q |
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| T |
6207199 |
gaagattataccgctgcctatttaaatctcccagaagttcaaaaggctcttcatgttaaacccataaaatggtctcattgcaggtacacactaaaataag |
6207100 |
T |
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| Q |
116 |
ttgtaattgtgttttattttcccacaatttcaaaatgcattaattgtaaatgctatagtatttctatgaatcaatgtctaatgctctttttcagtggtgt |
215 |
Q |
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| T |
6207099 |
ttgtaattgtgttttattttcccacaatttcaaaatgcattaattgtaaatgctatagtatttctatgaatcaatgtctaatgctctttttcagtggtgt |
6207000 |
T |
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| Q |
216 |
gggttggacggatagtccaactagtattctaccaactata |
255 |
Q |
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| T |
6206999 |
gggttggacagatagtccaactagtattctaccaactata |
6206960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 6214859 - 6214771
Alignment:
| Q |
16 |
gaagattataccactacctatttaaatctcccagaagttcaaaaggctcttcatgttaaacccataaaatggtctcattgcaggtacac |
104 |
Q |
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| T |
6214859 |
gaagattataccactacctatttaaatctcccagaagttcaaaaggctcttcatgttaaacgcacaaaatggtctccttgcaggtacac |
6214771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 6177389 - 6177148
Alignment:
| Q |
16 |
gaagattataccactacctatttaaatctcccagaagttcaaaaggctcttcatgttaaacccataaaatggtctcattgcaggtacacactaaaataag |
115 |
Q |
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| T |
6177389 |
gaagattatactaatgcttatttaaacctacctaaagttcaagaggctcttcatgttaaacccacaaaatggtcttcttgcaggtacac--taaatactg |
6177292 |
T |
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| Q |
116 |
ttg-taattgtg---ttttattttcccacaatttcaaaatgcattaattgtaaatgctatagtatttctatgaatcaatgt--ctaatgctctttttcag |
209 |
Q |
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||| ||||| || |||||||| || |||||||||||||||||| | ||||||| | || |||||| ||||||||||| |||||| |||||||||| |
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| T |
6177291 |
ttgctaattatgatgttttattt-cctacaatttcaaaatgcatttacagtaaatgttgtactatttcc-tgaatcaatgtgtctaatggtctttttcag |
6177194 |
T |
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| Q |
210 |
tggtgtgggttggacggatagtccaactagtattctaccaactata |
255 |
Q |
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|| | || ||||||| ||||||||| | |||||||||||||||||| |
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| T |
6177193 |
tgatctgagttggacagatagtccagcaagtattctaccaactata |
6177148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 255
Target Start/End: Complemental strand, 6214721 - 6214656
Alignment:
| Q |
190 |
tgtctaatgctctttttcagtggtgtgggttggacggatagtccaactagtattctaccaactata |
255 |
Q |
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| T |
6214721 |
tgtctaatggtctttttcagtgatctgagttggacagatagtccagcaagtattctgccaactata |
6214656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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