View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19233_high_12 (Length: 269)
Name: NF19233_high_12
Description: NF19233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19233_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 2 - 253
Target Start/End: Original strand, 34019772 - 34020001
Alignment:
| Q |
2 |
ttggttaaatactaattttttgcatgacaaattaaaactgtccatgagagtgacatatggtttgtgattgatttgattataaataaataaaactgaattt |
101 |
Q |
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| T |
34019772 |
ttggttaaatactaattttttgcatgacaaattaaaactgtccatgagagtgacat----------------------ataaataaataaaactgaattt |
34019849 |
T |
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| Q |
102 |
aaatttgttgcaggcctgtatcaggaggatctatgaacccagcaagaagtattggtcctgcacttatagtacatgtttacaaaggactatgggtatatgt |
201 |
Q |
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| T |
34019850 |
aaatttgttgcaggcctgtatcaggaggatctatgaacccagcaagaagtattggtcctgcacttatagtacatgtttacaaaggactatggatatatgt |
34019949 |
T |
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| Q |
202 |
ggttggtccaattgttggagctatagctggagcaattgcatataactttctt |
253 |
Q |
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| T |
34019950 |
ggttggtccaattgttggagctatagctggagcaattgcatataactttctt |
34020001 |
T |
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Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 114 - 252
Target Start/End: Complemental strand, 1703764 - 1703626
Alignment:
| Q |
114 |
ggcctgtatcaggaggatctatgaacccagcaagaagtattggtcctgcacttatagtacatgtttacaaaggactatgggtatatgtggttggtccaat |
213 |
Q |
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| T |
1703764 |
ggcctgtgtcaggtgcatctatgaacccagcaagaagtattggtcctgcaattgtgatacatatttacaaaggattgtggatatatatagttggtccaat |
1703665 |
T |
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| Q |
214 |
tgttggagctatagctggagcaattgcatataactttct |
252 |
Q |
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| T |
1703664 |
tattggagccatagctggagcacttgcctataactttct |
1703626 |
T |
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