View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19233_high_14 (Length: 248)
Name: NF19233_high_14
Description: NF19233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19233_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 44 - 229
Target Start/End: Complemental strand, 39246178 - 39245992
Alignment:
| Q |
44 |
ataattctcacaaaagcttcc-gaaaactaatttggccaatcaaaattattgctctgcggaatacacagaaaaccaagggaatatacgttccaaccaaaa |
142 |
Q |
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| T |
39246178 |
ataattctcacgaaagcttcctgaaaactaatttggccaatcaaaattgttgctctacggaatacacggaaaaccaagggaatatacgttccaaccaaaa |
39246079 |
T |
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| Q |
143 |
tatatcagcttttcctcgagataaattcgggccaaattgttcgctatgaatagtattttccatttattaatagtcagacacatttct |
229 |
Q |
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| T |
39246078 |
tatatcagctttttctcgagataaattcgggccaaattgttcgctatgaatagtattttccatttattaatagtcagacatatttct |
39245992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 39308169 - 39308104
Alignment:
| Q |
44 |
ataattctcacaaaagcttccgaaaactaatttggccaatcaaaattattgctctgcggaatacac |
109 |
Q |
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|||||||||| |||||| ||||||| |||||||||||||||| || ||||| |||||||||||| |
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| T |
39308169 |
ataattctcaagaaagctcccgaaaatcaatttggccaatcaaagttgttgctttgcggaatacac |
39308104 |
T |
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