View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19233_high_16 (Length: 244)
Name: NF19233_high_16
Description: NF19233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19233_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 28479308 - 28479522
Alignment:
| Q |
18 |
tttaagtagtgtaagtggggtgcgtggggttcaaactctggctctttcatataatatgcaatattcctgtcaattgatttaaggtcacgtgactaaaata |
117 |
Q |
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| T |
28479308 |
tttaagtagtgtaagtggggtgtctggggttcaaactccggctctttcatataatatgcaatatccctgtcaattgagttaagttcacgtgactaaaata |
28479407 |
T |
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| Q |
118 |
atactattatttatgtatattgtaagttccatctttcatgtagttcatgtattaattagataatgtttttgcatttcaattgtagcttaaattgactata |
217 |
Q |
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| T |
28479408 |
atactattatttatgtatattgtaagttccatctttcatgtagttcatgtattaattagataatgtttttgcatttcaattgtagcttaaattgactata |
28479507 |
T |
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| Q |
218 |
agctcaatattttaa |
232 |
Q |
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| T |
28479508 |
agctcaatattttaa |
28479522 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 15775805 - 15775741
Alignment:
| Q |
42 |
tggggttcaaactctggctctttcatataatatgcaatattcctgtcaattgatttaaggtcacg |
106 |
Q |
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|||||||| ||||| ||||| | ||||||||||||||||| ||| ||||||| ||||| ||||| |
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| T |
15775805 |
tggggttcgaactccggctcctgcatataatatgcaatatccctaccaattgagttaagctcacg |
15775741 |
T |
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