View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19233_high_17 (Length: 239)
Name: NF19233_high_17
Description: NF19233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19233_high_17 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 5 - 239
Target Start/End: Complemental strand, 6207394 - 6207160
Alignment:
| Q |
5 |
gtagattattctgcttacattctgtttgataaaaaatagctcattttgttagccgatggtagatgaatctatagcaaacaacggatagactatctgatta |
104 |
Q |
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| T |
6207394 |
gtagattagtctgcttacattctgtttgataaaaaatagctcattttgttagccgatggtagatgaatctatagcaaataacggatagactatctgatta |
6207295 |
T |
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| Q |
105 |
aaatatttaaagtgtttagtaaaattaatcgataaagttaattacaaaatcttcttaaatgaaatttgcaggtcagtaatatcgacccttgtgctgaaga |
204 |
Q |
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| T |
6207294 |
aaatatttaaagtgtttagtaaaattaatcgataaagttaattacaaaatcttcttaaatgaaatttgcaggtcagtaatatcgacccttgtgctgaaga |
6207195 |
T |
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| Q |
205 |
ttataccgctgcctatttaaatctcccagaagttc |
239 |
Q |
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| T |
6207194 |
ttataccgctgcctatttaaatctcccagaagttc |
6207160 |
T |
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Target: chr1; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 142 - 239
Target Start/End: Complemental strand, 6214918 - 6214820
Alignment:
| Q |
142 |
ttaattacaaaat-cttcttaaatgaaatttgcaggtcagtaatatcgacccttgtgctgaagattataccgctgcctatttaaatctcccagaagttc |
239 |
Q |
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| T |
6214918 |
ttaattacaaaattcttcttaaatgaaatttgcaggtcagtaatgtcgacccttgtgctgaagattataccactacctatttaaatctcccagaagttc |
6214820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 143
Target Start/End: Complemental strand, 6215030 - 6214942
Alignment:
| Q |
52 |
gttagccgatggtagatgaatctatagcaaacaacggatagactatctgattaaaatatttaaagtgtttagtaaaattaatcgataaagtt |
143 |
Q |
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| T |
6215030 |
gttagctgatggttgatgaacctataacaaataacggatagactatctgattaa---atttaaagtgttggataaaattaaacaataaagtt |
6214942 |
T |
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