View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19233_high_3 (Length: 484)
Name: NF19233_high_3
Description: NF19233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19233_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Complemental strand, 54087891 - 54087431
Alignment:
| Q |
1 |
aaattaatttggatatgtgtacattatttgtcgttattgagatgagtccattagtaacagtacatgccactcacttcagcataatgtataatacatagtg |
100 |
Q |
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| T |
54087891 |
aaattaatttggatatgtgtacattatttgtcgttattgagatgagtccattagtaacagtacatgccactcacttcagcataatgtataatacatagtg |
54087792 |
T |
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| Q |
101 |
ggatatacatcattttgatacgtgtaatccaaattcaagaagaaatgctattaaggatatgtatgtttatttgcagggccactaaaacacgttaattcaa |
200 |
Q |
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| T |
54087791 |
ggatatacatgattttgatacgtgtaatccaaattcaagaagaaatgctattaaggatatgtatgtttatttgcagggccactaaaacacgttaattcaa |
54087692 |
T |
|
| Q |
201 |
gatgtaaagcatatgctgagatttgagaacgttatggaagagttaccaagctattttgttagaaatttatttttatctgttattattgatcttccattga |
300 |
Q |
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| T |
54087691 |
gatgtaaaacatatgctgagatttgagaacgttatggaagagttaccaagctattttgttagaaatttatttttatctgtaattattgatcttccattga |
54087592 |
T |
|
| Q |
301 |
tttataaaactaaacgttggttaactcatatgttaataacttaatatatgtcccggactatttgtgtttatannnnnnnnngattatgtaacaattgtaa |
400 |
Q |
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| T |
54087591 |
tttataaaactaaacgttggttaactcatatgttaataacttaatatatgtcccggactatttgtgtttata-----ttttgattatgtaacagttgtaa |
54087497 |
T |
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| Q |
401 |
cccttttgtaaatggcaaatttcctcttcactttctctataagcatgtttttagatatacgttaaag |
467 |
Q |
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| T |
54087496 |
cccttttgtaaatagcaaatttcctcttcactttct-tataagcatgtttttagatatacattaaag |
54087431 |
T |
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Back To:
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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 286 - 322
Target Start/End: Complemental strand, 22382311 - 22382275
Alignment:
| Q |
286 |
ttgatcttccattgatttataaaactaaacgttggtt |
322 |
Q |
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| T |
22382311 |
ttgatcttccattgatttataaaattaaacattggtt |
22382275 |
T |
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