View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19233_high_4 (Length: 441)

Name: NF19233_high_4
Description: NF19233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19233_high_4
NF19233_high_4
[»] chr4 (1 HSPs)
chr4 (80-441)||(54087900-54088258)


Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 80 - 441
Target Start/End: Complemental strand, 54088258 - 54087900
Alignment:
Q  80 aggtcctttcttgctgctctactttcacatgcaataacattcattgcaacaagcaaagaaacaacagctaaaatcttcattgaagccattgtcacggatc 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54088258 aggtcctttcttgctgctctactttcacatgcaataacattcattgcaacaagcaaagaaacaacagctaaaatcttcattgaagccattgtcacggatc 54088159  T
Q  180 aaacaataaaaggcaaatatatatatcagcacgtttgaacttatctaaagccaatattgatttagagattgaaatgttttaattgtagagaagtatgttg 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54088158 aaacaataaaaggcaaatatatatatcagcacgtttgaacttatctaaagccaatattgatttagagattgaaatgttttaattgtagagaagtatgttg 54088059  T
Q  280 agatatgcatgctatttatagatgagattatgatagctagcgctaatgtacgtcggcaagcatgtgtaaaagctggaggtgtgcatgcgtatggaaatgt 379  Q
    |||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||     
T  54088058 agatatgcatgctatttatagatgagattatga----tagcgctaatgtacgtcggcaagcatgtgtaaaagctagaggtgtgcatgcgtatggaaatgg 54087963  T
Q  380 gacaatgtagggagtgggggtgtcacttatgacataagtcaac-tttttctggtggaaatttt 441  Q
    ||||||||||| |||||||||||||||| || || |||||||| |||||||||||||||||||    
T  54087962 gacaatgtaggaagtgggggtgtcacttgtggcacaagtcaacttttttctggtggaaatttt 54087900  T

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