View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19233_high_5 (Length: 428)
Name: NF19233_high_5
Description: NF19233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19233_high_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 14 - 428
Target Start/End: Complemental strand, 35473969 - 35473552
Alignment:
| Q |
14 |
tatccttcatcctgcctctcctccttctctcagaaatgagagtcttggacctatcagttttagccctagggttggcatcatcgatcgtggttgtcgtcgt |
113 |
Q |
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| T |
35473969 |
tatccttcatcctgcctctcctccttctctcagaaatgagagtcttggacctatcagttttagccctagggttggcatcatcgatcgtggttgtcgttgt |
35473870 |
T |
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| Q |
114 |
cgtcgttg---cagaagaaccacctccatcattttctccttctcctttaatcactccatcataacaagagaaggagccaattgttgtagggcttggatta |
210 |
Q |
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| T |
35473869 |
cgttgttgttgcagaagaaccacctccatcattttctccttctcctttaatcactccatcataacaagagaaggagccaattgttgtagggcttggatta |
35473770 |
T |
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| Q |
211 |
tactcattaacaacattattattaataatattgttgttgtgatcaaataatgggtttggaggaattgaaagaaattggttaatattattatcaatgaagc |
310 |
Q |
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| T |
35473769 |
tactcattaacaacattattattaataatattgttgttgtgatcaaataatggatttggaggaattgaaagaagttggttaatattattatcaatgaagc |
35473670 |
T |
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| Q |
311 |
aatcattgataaggtcagaaccaaagttagatattgcatcttcatgctcacctcgaattaaatcgataaattgatcaaagtttggatcatcgatgaagtc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
35473669 |
aatcattgataaggtcagaaccaaagttagatattgcatcttcatgctcacctcgaattaaatcgataaattgatcaaagtttggatcgtcaatgaagtc |
35473570 |
T |
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| Q |
411 |
atgcagctcaaagttatt |
428 |
Q |
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| T |
35473569 |
atgcagctcaaagttatt |
35473552 |
T |
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