View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19233_high_8 (Length: 311)
Name: NF19233_high_8
Description: NF19233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19233_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 49305422 - 49305715
Alignment:
| Q |
1 |
aaaatggaacaaaatcgcttaccatatatttatgaatacgagagtatgtatattgcgtatgtgattcgggtgcaagccgtgtgttgttgtgttcaaaata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49305422 |
aaaatggaacaaaatcgcttaccatatatttatgaatacgagagtatgtatattgcgtatgtgattcgggtgcaagccgtgtgttgttgtgttcaaaata |
49305521 |
T |
|
| Q |
101 |
gaataaacgtactgtaacattaacatgcatgattcctttttgatctcatcatcatcgaatagttagaaatataccaattcggagaaaagacaagagggaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49305522 |
gaataaacgtactgtaacattaacatgcatgattcctttttgatctcatcatcatcgaatagttagaaatataccaattcggagaaaagacaagagggaa |
49305621 |
T |
|
| Q |
201 |
aaaagaacaagtggagtatgaattcttaatcaaacgaagataaagaatatggagaaaaatgtagttaattagatagagactgttgaagtgcctg |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49305622 |
aaaagaacaagtggagtatgaattcttaatcaaacgaagataaagaatatggagaaaaatgtagttaattagatagagactgttgaagtgcctg |
49305715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 120
Target Start/End: Original strand, 49298456 - 49298553
Alignment:
| Q |
25 |
tatatttatgaatacgagagtatgtatattgcgtatgtgattcgggtgcaagccgtgtgttgttgt----gttcaaaatagaataaacgtactgtaacat |
120 |
Q |
| |
|
|||||||||||| |||| ||||||| || ||||||||||||||||||||| |||| ||||||||| || ||||||||||||||| |||||||||| |
|
|
| T |
49298456 |
tatatttatgaagacgatagtatgtgta--gcgtatgtgattcgggtgcaaaccgtttgttgttgttatgcttaaaaatagaataaacgcactgtaacat |
49298553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 120
Target Start/End: Original strand, 49290655 - 49290718
Alignment:
| Q |
57 |
gtatgtgattcgggtgcaagccgtgtgttgttgtgttcaaaatagaataaacgtactgtaacat |
120 |
Q |
| |
|
||||||||||||||||||| |||||||||||| || | ||||||||||||| |||||||||| |
|
|
| T |
49290655 |
gtatgtgattcgggtgcaaaccgtgtgttgttatgctggaaatagaataaacccactgtaacat |
49290718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 252
Target Start/End: Original strand, 49298639 - 49298686
Alignment:
| Q |
203 |
aagaacaagtggagtatgaattcttaatcaaacgaagataaagaatatgg |
252 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
49298639 |
aagaacaagtggagg--gaattcttaatcaaacgaagataaagaatatgg |
49298686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University