View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19233_high_9 (Length: 305)
Name: NF19233_high_9
Description: NF19233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19233_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 8e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 14720899 - 14721159
Alignment:
| Q |
18 |
agttaaagttgcaactgtggcacttggacgcagacatgaacaagcattgaactttacttaaatttgtaatatttgtcatgacttttcgttcggcaattca |
117 |
Q |
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| T |
14720899 |
agttaaagtttcaactgtggcacttggacgcagacatgaaaaagcattgaactttacttgaatttgtaatatttgtcattatttttcgttcggcaattca |
14720998 |
T |
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| Q |
118 |
ataatcctaaatcatgactttacttttaactactataacatgtttcctttttcaattgaaacac-----gtatttatttgggtacaattgaaa-acataa |
211 |
Q |
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| T |
14720999 |
ataatcctaaatcatgactttactttcaactactataacatgtttcctttttcaattgaaacacgtacggtatttatttgggtacaattgaaacacgtaa |
14721098 |
T |
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| Q |
212 |
tttgaaatggagagacatcttatactattattaaaacatccaaaacc-aacgaatctaaattg |
273 |
Q |
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| T |
14721099 |
tttgaaatg--cagacatcttatactattattaaaacattcaaaaccaaatgaatctaaattg |
14721159 |
T |
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