View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19233_low_11 (Length: 302)
Name: NF19233_low_11
Description: NF19233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19233_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 6e-77; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 8432135 - 8431974
Alignment:
| Q |
1 |
aaaatcaatactatatcattggcagtttctttcttcttcaattacttaaataaggaaaaatactcgaatgtaaattaaattaagcttgcctagctaaata |
100 |
Q |
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| T |
8432135 |
aaaatcaatactatatcattggtagtttttttcttcttcaattacttaaataaggaaaaatactcgaatgtaaattaaattaagcttgcctagctaaata |
8432036 |
T |
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| Q |
101 |
ttacatgacttgatctatgttgcattaacttgtaaacacagctactttctaacatggaaatt |
162 |
Q |
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| T |
8432035 |
ttacatgaattgatatatgttgcattaacttgtaaacacagctactttctaacatggaaatt |
8431974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 14 - 103
Target Start/End: Complemental strand, 8440909 - 8440819
Alignment:
| Q |
14 |
tatcattggcagtttctt-tcttcttcaattacttaaataaggaaaaatactcgaatgtaaattaaattaagcttgcctagctaaatatta |
103 |
Q |
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| T |
8440909 |
tatcattgacagttttttcttttcttcaattacttaaacaaggaaaaatacttgaatgttaattaaactaagcttgcctagccaaatatta |
8440819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 251 - 300
Target Start/End: Complemental strand, 8431362 - 8431313
Alignment:
| Q |
251 |
aagttgcatgcatatttaccttaatcgatgtatgatgtcaatctctgctc |
300 |
Q |
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| T |
8431362 |
aagttgcatgcatatttaccttaatcgatgtatgatgtcaatctctgctc |
8431313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 8437663 - 8437594
Alignment:
| Q |
34 |
ttcttcaattacttaaataaggaaaaatactcgaatgtaaattaaattaagcttgcctagctaaatatta |
103 |
Q |
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| T |
8437663 |
ttcttcaattacttaaacaaggaaaaatacttgaatgttaattaaactaagcttgcctagccaaatatta |
8437594 |
T |
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