View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19233_low_15 (Length: 250)
Name: NF19233_low_15
Description: NF19233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19233_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 5589564 - 5589805
Alignment:
| Q |
1 |
ctctaagttcttcaagagctttgggatggtcatggaggtatttcacagccatcattgaagtggttgaaacagtttcataaccagaatacataagtgtaat |
100 |
Q |
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| T |
5589564 |
ctctaagttcttcaagagctttgggatggtcatggaggtatttcacagccatcattgaagtggttgaaacagtttcataaccagaatacataagtgtaat |
5589663 |
T |
|
| Q |
101 |
cactagatcaatgatttcttcatcacttagtttgtacttattttcttctctttccatcaaacaaccaagcatgtctttgtgaatttcattggatgctctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5589664 |
cactagatcaatgatttcttcatcacttagtttgtacttattttcttctctttccatccaacaaccaagcatgtctttgtgaatttcattggatgctctt |
5589763 |
T |
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| Q |
201 |
ctttcctttattagttgactcaaaatgctgactatattcttc |
242 |
Q |
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| T |
5589764 |
ctttcctttattagttgactcaaaatgctgactatattcttc |
5589805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 974381 - 974621
Alignment:
| Q |
1 |
ctctaagttcttcaagagctttgggatggtcatggaggtatttcacagccatcattgaagtggttgaaacagtttcataaccagaatacataagtgtaat |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
974381 |
ctcttagttcttcaagagctttgggatggtcatggaggtacttcacagccatcattgatgtggttgaaacagtttcataaccagaatacataagtgtaat |
974480 |
T |
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| Q |
101 |
cactagatcaatgatttcttcatcacttagtttgtacttattttcttctctttccatcaaacaaccaagcatgtctttgtgaatttcattggatgctctt |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
974481 |
cacttgatcaatgatttcttcatcacttagtttgtacttattttcttctctttccatcaaataaccaagcatgtctttgtgagtttcattggatgctctt |
974580 |
T |
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| Q |
201 |
ctttcctttattagttgactcaaaatgctgactatattctt |
241 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |
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| T |
974581 |
ctttcctttaatagttgactcaaaatgctgactatattctt |
974621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 134
Target Start/End: Original strand, 5065580 - 5065702
Alignment:
| Q |
12 |
tcaagagctttgggatggtcatggaggtatttcacagccatcattgaagtggttgaaacagtttcataaccagaatacataagtgtaatcactagatcaa |
111 |
Q |
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|||||| |||| ||||| ||||| ||||| || |||||||||||||| || ||||||| ||||||||||||||||||||||| |||||| | |||||||| |
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| T |
5065580 |
tcaagaactttaggatgatcatgcaggtactttacagccatcattgatgtagttgaaatagtttcataaccagaatacataattgtaatgattagatcaa |
5065679 |
T |
|
| Q |
112 |
tgatttcttcatcacttagtttg |
134 |
Q |
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| | |||||||||| ||| |||| |
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| T |
5065680 |
taagttcttcatcatttaatttg |
5065702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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