View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19233_low_17 (Length: 247)
Name: NF19233_low_17
Description: NF19233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19233_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 28479535 - 28479772
Alignment:
| Q |
1 |
taaagtatctaatgtcatgcaggccacaatatttcattatggttcagttagcttaattaaggagccttctaggtcaactcacattgaagcaataaattat |
100 |
Q |
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| T |
28479535 |
taaagtatctaatgtcatgcaggccacaatatttcattatggttcagttagcttaattaaggagccttctaggtcaactcacattgaagcaataaattat |
28479634 |
T |
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| Q |
101 |
gccaaaatgtgtggtagtatactgtcttatgccccaaatttgacagtgccactatggccatcaacagaggctgctagggaaggcatcatgagtatttgga |
200 |
Q |
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| T |
28479635 |
gccaaaatgtgtggtagtatactgtcttatgccccaaatttgacagtgccactatggccatcaacagaggctgctagggaaggcatcatgagtatttgga |
28479734 |
T |
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| Q |
201 |
actatgcagacgttattaaggtaaatgttttgaatatt |
238 |
Q |
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| T |
28479735 |
actatgcagacgttattaaggtaaatgttttgaatatt |
28479772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 18945365 - 18945410
Alignment:
| Q |
179 |
gaaggcatcatgagtatttggaactatgcagacgttattaaggtaa |
224 |
Q |
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| T |
18945365 |
gaagacatcatgagtatttggaactatgcagacattattaaggtaa |
18945410 |
T |
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