View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19233_low_2 (Length: 716)
Name: NF19233_low_2
Description: NF19233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19233_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 460; Significance: 0; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 11 - 693
Target Start/End: Complemental strand, 30502335 - 30501651
Alignment:
| Q |
11 |
cgaagaatatcccgattttcttgaagcttgccattccttcagctgcaatggtttggtaatcaccttttctaatagttcagtattgtataacactacgtat |
110 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30502335 |
cgaacaatatcccgattttcttgaagcttgccattccttcagctgcaatggtttggtaatcaccttttctaatagttcagtattgtataacactacatat |
30502236 |
T |
|
| Q |
111 |
tattatataattttattaactatttagtttctttactaaaaattatcatatgttgttttcannnnnnnattttcgccttgttgcgagtagcttggaaata |
210 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
30502235 |
tattatataattttattaactatttggtttctttactgaaaattatcatatgttgttttcatttttttatttttgccttgttgcgagtagcttggaaata |
30502136 |
T |
|
| Q |
211 |
tggtcatttgaattagtggttctcctttccggtctccttccaaatccaaagttggaaacatcggtgctttctatctggttagtttc----------atat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30502135 |
tggtcatttgaattagtggttctcctttccggtctccttccaaatccaaagttggaaacatcggtgctttctatctggttagtttcatatatatatatat |
30502036 |
T |
|
| Q |
301 |
atatattcgagatcctcttcgatattattttgattattataacctatcgttggtgacttggcttgtcagtttgaatacaacagcagttgtttggatgatc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
30502035 |
atatattcgagatcctcttcgatattattttgattattttaacctattgttggtgacttggcttgtcagtttgaatacaacagcagtcgtttggatgatc |
30501936 |
T |
|
| Q |
401 |
ccatttggacttagtggagctataaggttagtatttctccattctttgagttcagtagcaacctcactattttcttaagcaaaaattctccaaaattttg |
500 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||| ||||| ||||||||||||| || | |
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|
| T |
30501935 |
ccatttggactaagtggagctataaggttagcatttctcaattctttgagttcattagcaacctcactattttcctaagcgaaaattctccaaagttatt |
30501836 |
T |
|
| Q |
501 |
ttctatttg--ttattttcatgnnnnnnnnnnnaatgctcttctttaagtttctgtctttagttttattagcgcttgaatg-atcttgcagcgttcgcgt |
597 |
Q |
| |
|
||| ||| ||||||| | | ||||||| |||||||||||||||| |||| ||||||||||||||| |||||||||||||| || |
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|
| T |
30501835 |
ttcatgttgatttattttttt-----------aattgctctttcttaagtttctgtctttcgtttcattagcgcttgaatgtttcttgcagcgttcgtgt |
30501747 |
T |
|
| Q |
598 |
ttcaaatgaactcggtgctggtaatccacaggctgcacgtttggcagtctgcgtcgttgtagtaattgccgttattgagagcattttagttggagc |
693 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
30501746 |
ttcaaatgaactcggtgctggtaatccacaggctgcacgtttggcagtctgcgtcgttgtagtaattgccattattgagagcattttagttggagc |
30501651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 571 - 690
Target Start/End: Complemental strand, 30483812 - 30483692
Alignment:
| Q |
571 |
gcttgaatgatc-ttgcagcgttcgcgtttcaaatgaactcggtgctggtaatccacaggctgcacgtttggcagtctgcgtcgttgtagtaattgccgt |
669 |
Q |
| |
|
||||||||||| ||||||| |||| |||||||||||||| ||||||||| ||||||||||||| ||||||||||| |||||||||||||| |||||||| |
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|
| T |
30483812 |
gcttgaatgattattgcagcattcgtgtttcaaatgaacttggtgctggtcatccacaggctgcgcgtttggcagtttgcgtcgttgtagtgattgccgt |
30483713 |
T |
|
| Q |
670 |
tattgagagcattttagttgg |
690 |
Q |
| |
|
|||||||||||| |||||||| |
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|
| T |
30483712 |
tattgagagcatcttagttgg |
30483692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 199 - 432
Target Start/End: Complemental strand, 30511819 - 30511578
Alignment:
| Q |
199 |
agcttggaaatatggtcatttgaattagtggttctcctttccggtctccttccaaatccaaagttggaaacatcggtgctttctatctggttagtttcat |
298 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||| ||||||||||| ||||||||||| |||||||||||||| || ||||||||| |||| ||||| |
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| T |
30511819 |
agcttggaaatgtggtcatttgaattaatggttcttctttccggtcttcttccaaatccgaagttggaaacatcagtactttctatcaggttggtttc-- |
30511722 |
T |
|
| Q |
299 |
atatatattcgagatcctcttcgatattatt---ttgattatta----------taacctatcgttggtgac-ttggcttgtcagtttgaatacaacagc |
384 |
Q |
| |
|
||||| |||| |||||| |||||||| || ||||||| |||||| | ||||||||| ||| ||||||||||||||||| | || |
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|
| T |
30511721 |
----atattgaagattctcttcaatattattgactttattattatgattttcattaaccttttgttggtgactttgttttgtcagtttgaatacatcggc |
30511626 |
T |
|
| Q |
385 |
agttgtttggatgatcccatttggacttagtggagctataaggttagt |
432 |
Q |
| |
|
| |||||||||||||||| ||||||||||| ||||||||||||||||| |
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|
| T |
30511625 |
acttgtttggatgatcccctttggacttagcggagctataaggttagt |
30511578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 199 - 333
Target Start/End: Original strand, 24708021 - 24708149
Alignment:
| Q |
199 |
agcttggaaatatggtcatttgaattagtggttctcctttccggtctccttccaaatccaaagttggaaacatcggtgctttctatctggttagtttcat |
298 |
Q |
| |
|
||||||||| | |||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||| |
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|
| T |
24708021 |
agcttggaattgtggtcatttgaattgatggttcttctttccggtcttcttccaaatccaaagttggaaacatcagtgctttctatttggtttgtttc-- |
24708118 |
T |
|
| Q |
299 |
atatatattcgagatcctcttcgatattattttga |
333 |
Q |
| |
|
|||||| ||||||| |||||||||||||||| |
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|
| T |
24708119 |
----atattcaagatccttttcgatattattttga |
24708149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 203 - 300
Target Start/End: Complemental strand, 30484308 - 30484211
Alignment:
| Q |
203 |
tggaaatatggtcatttgaattagtggttctcctttccggtctccttccaaatccaaagttggaaacatcggtgctttctatctggttagtttcatat |
300 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||| ||| | |||||||||||||||||||||||||| ||||||||||||||||| ||| ||||| |
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|
| T |
30484308 |
tggaaatgtggtcatttgaattgatggttctcctttctggtgttcttccaaatccaaagttggaaacatctgtgctttctatctggttggttgcatat |
30484211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 558 - 693
Target Start/End: Complemental strand, 30511488 - 30511352
Alignment:
| Q |
558 |
tagttttattagcgcttgaatga-tcttgcagcgttcgcgtttcaaatgaactcggtgctggtaatccacaggctgcacgtttggcagtctgcgtcgttg |
656 |
Q |
| |
|
|||||| |||| |||||||||| ||||||||| |||| || || ||||||||||| ||||||||||||| ||| |||||||||||||| | ||||||| |
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|
| T |
30511488 |
tagtttcattaatgcttgaatgactcttgcagcattcgtgtctcgaatgaactcggggctggtaatccacgggccgcacgtttggcagtgtatgtcgttg |
30511389 |
T |
|
| Q |
657 |
tagtaattgccgttattgagagcattttagttggagc |
693 |
Q |
| |
|
|||| || ||| ||||||||||||| |||||||||| |
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|
| T |
30511388 |
tagtgatagccattattgagagcatcgtagttggagc |
30511352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 30484518 - 30484407
Alignment:
| Q |
16 |
aatatcccgattttcttgaagcttgccattccttcagctgcaatggtttggtaatcaccttttctaatagttcagtattgtataacactacgtattatta |
115 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||| || |||| ||| |||| || |||||| | |
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|
| T |
30484518 |
aatatcccaattttcctgaagcttgccattccttcagctgtaatggtttggtaatcaccttctctaatacttgagtaatgtttaacggaacatattataa |
30484419 |
T |
|
| Q |
116 |
tataattttatt |
127 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
30484418 |
tagaattttatt |
30484407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 558 - 693
Target Start/End: Original strand, 24708406 - 24708542
Alignment:
| Q |
558 |
tagttttattagcgcttgaatgat-cttgcagcgttcgcgtttcaaatgaactcggtgctggtaatccacaggctgcacgtttggcagtctgcgtcgttg |
656 |
Q |
| |
|
|||||| | ||| ||||||||||| ||||||| |||| || |||||||||||||| |||||| |||||| ||||| |||||||||||| ||||||| |
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|
| T |
24708406 |
tagtttgactagggcttgaatgattcttgcagtattcgtgtctcaaatgaactcggggctggtcatccacgggctgtacgtttggcagtgaatgtcgttg |
24708505 |
T |
|
| Q |
657 |
tagtaattgccgttattgagagcattttagttggagc |
693 |
Q |
| |
|
|||| |||||| |||||||| |||| ||||||||||| |
|
|
| T |
24708506 |
tagtgattgccattattgagggcatcttagttggagc |
24708542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 364 - 446
Target Start/End: Complemental strand, 30484020 - 30483938
Alignment:
| Q |
364 |
tgtcagtttgaatacaacagcagttgtttggatgatcccatttggacttagtggagctataaggttagtatttctccattctt |
446 |
Q |
| |
|
||||||||| ||||||||||||| |||| |||||||| |||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
30484020 |
tgtcagtttaaatacaacagcagcagtttttatgatcccctttggacttagtggagctgtaaggttagtatttctcaattctt |
30483938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 349 - 446
Target Start/End: Original strand, 24708186 - 24708284
Alignment:
| Q |
349 |
gttggtgacttggctt-gtcagtttgaatacaacagcagttgtttggatgatcccatttggacttagtggagctataaggttagtatttctccattctt |
446 |
Q |
| |
|
||||||||||||| || |||||| |||||||| ||| || | ||||||||||||| |||||||||||||||||| |||||||||||||| | |||||| |
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|
| T |
24708186 |
gttggtgacttggttttgtcagtatgaatacagcaggagctatttggatgatcccccttggacttagtggagctacaaggttagtatttcccaattctt |
24708284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 30511976 - 30511916
Alignment:
| Q |
16 |
aatatcccgattttcttgaagcttgccattccttcagctgcaatggtttggtaatcacctt |
76 |
Q |
| |
|
|||||||| |||||| |||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
30511976 |
aatatcccaattttcctgaagcttgctgttccttcagctgtaatggtttggtaatcacctt |
30511916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 24707808 - 24707892
Alignment:
| Q |
16 |
aatatcccgattttcttgaagcttgccattccttcagctgcaatggtttggtaatcaccttttctaatagttcagtattgtataa |
100 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||| ||| |||||||||||||||| ||| || |||| || |||| ||||||| |
|
|
| T |
24707808 |
aatatcccaatttttatgaagcttgccattccttcggctataatggtttggtaatcatcttctcgaatacttaagtactgtataa |
24707892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 581 - 665
Target Start/End: Complemental strand, 30469999 - 30469915
Alignment:
| Q |
581 |
tcttgcagcgttcgcgtttcaaatgaactcggtgctggtaatccacaggctgcacgtttggcagtctgcgtcgttgtagtaattg |
665 |
Q |
| |
|
|||||||||||||| |||||||||||||| || || |||||| | |||||||||||||||||| || || |||||||| |||| |
|
|
| T |
30469999 |
tcttgcagcgttcgtgtttcaaatgaacttggagcaggtaatgctagggctgcacgtttggcagtgtgtgttgttgtagtgattg |
30469915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 210 - 296
Target Start/End: Complemental strand, 30380672 - 30380586
Alignment:
| Q |
210 |
atggtcatttgaattagtggttctcctttccggtctccttccaaatccaaagttggaaacatcggtgctttctatctggttagtttc |
296 |
Q |
| |
|
|||| |||||||| || |||| || ||||| ||| ||||| |||||||| ||| ||||||| ||||||||||| ||||||||||| |
|
|
| T |
30380672 |
atggacatttgaactaatggtgcttctttctggtgctcttcccaatccaaaattgcaaacatcagtgctttctatatggttagtttc |
30380586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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