View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19233_low_20 (Length: 238)
Name: NF19233_low_20
Description: NF19233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19233_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 5589415 - 5589194
Alignment:
| Q |
1 |
tgtatcaatcgtgtttgactgcaatgtctagaatcgcgacgcgaccaatgttgaaaactttggttataatattttctttatgttttctatcctaactatg |
100 |
Q |
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| T |
5589415 |
tgtatcaatcgtgtttgactgcaatgtctagaatcgcgacgcgaccaatgttgaaaacttttgttataatattttctttatgttttctatcctaactatg |
5589316 |
T |
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| Q |
101 |
taatctatatgttgcagaaagagcatttggccataagagagaggaaaaagccaaatgaaccaattgattccaatgatctcaaatcaatgaggtttactcg |
200 |
Q |
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| T |
5589315 |
taatctatatgttgcagaaagagcatttggccataagagagaggaaaaagccaaatgaaccaattgattccaatgatctcaaatcaatgaggtttactcg |
5589216 |
T |
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| Q |
201 |
tgcggtaagattgataaccttt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
5589215 |
tgcggtaagattgataaccttt |
5589194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 26 - 222
Target Start/End: Complemental strand, 974192 - 973997
Alignment:
| Q |
26 |
gtctagaatcgcgacgcgaccaatgttgaaaactttggttataatattttctttatgttttctatcctaactatgtaatctatatgttgcagaaagagca |
125 |
Q |
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| T |
974192 |
gtctagaatcgcgacgtgaccagtatttaaaacttaggttagaatattttgtt-atgttttccatcctaactatgtgatttatatgttgcagaaagagca |
974094 |
T |
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| Q |
126 |
tttggccataagagagaggaaaaagccaaatgaaccaattgattccaatgatctcaaatcaatgaggtttactcgtgcggtaagattgataaccttt |
222 |
Q |
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| T |
974093 |
tttggccataagagagaggaaaaaaccaaatgaaccaattgattccaatgatctcaaatcaatgaagtttactcgtgcggtaagattgataaccttt |
973997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 209
Target Start/End: Complemental strand, 5065491 - 5065389
Alignment:
| Q |
107 |
atatgttgcagaaagagcatttggccataagagagaggaaaaagccaaatgaaccaattgattccaatgatctcaaatcaatgaggtttactcgtgcggt |
206 |
Q |
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|||| ||||||||||||||||| || || ||||| |||||||||||| | || || || |||| ||||||||||| || |||||||||||||| || || |
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| T |
5065491 |
atatcttgcagaaagagcattttgctattagagaaaggaaaaagccagaagatcctatagattgtaatgatctcaagtctatgaggtttactcgagcagt |
5065392 |
T |
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| Q |
207 |
aag |
209 |
Q |
| |
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||| |
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| T |
5065391 |
aag |
5065389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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