View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19233_low_3 (Length: 509)

Name: NF19233_low_3
Description: NF19233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19233_low_3
NF19233_low_3
[»] chr6 (9 HSPs)
chr6 (58-466)||(6679276-6679684)
chr6 (126-466)||(6774602-6774935)
chr6 (143-249)||(6668365-6668471)
chr6 (143-249)||(6780044-6780150)
chr6 (318-460)||(6668545-6668684)
chr6 (318-460)||(6779831-6779970)
chr6 (1-42)||(6766091-6766132)
chr6 (1-42)||(6775043-6775084)
chr6 (368-409)||(9866416-9866457)
[»] chr5 (8 HSPs)
chr5 (58-266)||(6162666-6162874)
chr5 (77-266)||(36848275-36848464)
chr5 (285-466)||(36848033-36848213)
chr5 (300-466)||(6162416-6162579)
chr5 (69-167)||(36859750-36859848)
chr5 (285-362)||(36859535-36859614)
chr5 (189-249)||(6163424-6163484)
chr5 (201-255)||(36859694-36859748)
[»] chr3 (4 HSPs)
chr3 (58-264)||(49881263-49881469)
chr3 (65-266)||(46521667-46521868)
chr3 (299-466)||(46521961-46522125)
chr3 (321-466)||(49881548-49881690)
[»] chr1 (2 HSPs)
chr1 (299-466)||(18135526-18135690)
chr1 (111-253)||(18135288-18135430)
[»] scaffold0299 (2 HSPs)
scaffold0299 (1-42)||(13209-13250)
scaffold0299 (378-425)||(13409-13453)


Alignment Details
Target: chr6 (Bit Score: 397; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 58 - 466
Target Start/End: Original strand, 6679276 - 6679684
Alignment:
Q  58 tattgacttggaaattctagattatttacttatgtgccttgaatcactgcaaaattgcaggttttagcagcggaaagtctttcaattagagaagtgctat 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6679276 tattgacttggaaattctagattatttacttatgtgccttgaatcactgcaaaattgcaggttttagcagcggaaagtctttcaattagagaagtgctat 6679375  T
Q  158 ctgtcgacaaacaattgaaagtgaataaacagtttctggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagtatgttcagt 257  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6679376 ctgttgacaaacaattgaaagtgaataaacagtttctggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagtatgttcagt 6679475  T
Q  258 ggtttatcaccaattctttcttctgaactaatatgtctcaggatttaatagaagttcccttggtttcaggttatacttctgtttcaagagattgaaggag 357  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6679476 ggtttatcaccaattttttcttctgaactaatatgtctcaggatttaatagaagttcccttggtttcaggttatacttctgtttcaatagattgaaggag 6679575  T
Q  358 tagatgtatgcatttttggaatgtatgtccaggaatttggctctgaatgcggcggcaatcccaatcagcgttgtgtatacatatcatatcttgattccgt 457  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6679576 tagatgtatgcatttttggaatgtatgtccaggaatttggctctgaatgcggcggcaatcccaatcagcgttgtgtatacatatcatatcttgattccgt 6679675  T
Q  458 caagtattt 466  Q
    |||||||||    
T  6679676 caagtattt 6679684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 126 - 466
Target Start/End: Complemental strand, 6774935 - 6774602
Alignment:
Q  126 agcggaaagtctttcaattagagaagtgctatctgtcgacaaacaattgaaagtgaataaacagtttctggacatcatcccagaggagaattaccctact 225  Q
    |||| ||||||| | |||||||||| ||||||||||||||||||||||||||||||||       |||||||||||||||||||||| ||||||||||||    
T  6774935 agcgaaaagtctcttaattagagaattgctatctgtcgacaaacaattgaaagtgaat-------ttctggacatcatcccagaggaaaattaccctact 6774843  T
Q  226 gaattctcttatagatcaagagtatgttcagtggtttatcaccaattctttcttctgaactaatatgtctcaggatttaatagaagttcccttggtttca 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6774842 gaattctcttatagatcaagagtatgttcagtggtttatcaccaattctttcttctgaactaatatgtctcaggatttaatagaagttcccttggtttca 6774743  T
Q  326 ggttatacttctgtttcaagagattgaaggagtagatgtatgcatttttggaatgtatgtccaggaatttggctctgaatgcggcggcaatcccaatcag 425  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6774742 ggttatacttctgtttcaaaagattgaaggagtagatgtatgcatttttggaatgtatgtccaggaatttggctctgaatgcggcggcaatcccaatcag 6774643  T
Q  426 cgttgtgtatacatatcatatcttgattccgtcaagtattt 466  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  6774642 cgttgtgtatacatatcatatcttgattccgtcaagtattt 6774602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 143 - 249
Target Start/End: Original strand, 6668365 - 6668471
Alignment:
Q  143 ttagagaagtgctatctgtcgacaaacaattgaaagtgaataaacagtttctggacatcatcccagaggagaattaccctactgaattctcttatagatc 242  Q
    ||||||||||| ||||||| ||||||||| ||| |||||| || ||||||| ||||||||  |||||||||||||||||| |||||||||||||||||||    
T  6668365 ttagagaagtgatatctgttgacaaacaactgacagtgaagaagcagtttcaggacatcactccagaggagaattaccctgctgaattctcttatagatc 6668464  T
Q  243 aagagta 249  Q
    |||||||    
T  6668465 aagagta 6668471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 143 - 249
Target Start/End: Complemental strand, 6780150 - 6780044
Alignment:
Q  143 ttagagaagtgctatctgtcgacaaacaattgaaagtgaataaacagtttctggacatcatcccagaggagaattaccctactgaattctcttatagatc 242  Q
    ||||| ||||| ||||||| ||||||||| ||| |||||| || || |||| ||||||||| |||||||||||||||||| |||||||||||||||||||    
T  6780150 ttagaaaagtgatatctgttgacaaacaactgacagtgaagaagcaatttcgggacatcattccagaggagaattaccctgctgaattctcttatagatc 6780051  T
Q  243 aagagta 249  Q
    |||||||    
T  6780050 aagagta 6780044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 318 - 460
Target Start/End: Original strand, 6668545 - 6668684
Alignment:
Q  318 tggtttcaggttatacttctgtttcaagagattgaaggagtagatgtatgcatttttggaatgtatgtccaggaatttggctctgaatgcggcggcaatc 417  Q
    |||||| ||||||| ||||| |||||  |||||||||||| |||||||||||| |||| ||||||||||||||| | |||||| ||||   | |||||||    
T  6668545 tggttttaggttattcttctatttcagaagattgaaggagcagatgtatgcatatttgcaatgtatgtccaggagtatggctcggaat---gtggcaatc 6668641  T
Q  418 ccaatcagcgttgtgtatacatatcatatcttgattccgtcaa 460  Q
    ||||||| || || ||||| || |||||||| ||||| |||||    
T  6668642 ccaatcaacgctgcgtatatatttcatatctcgattctgtcaa 6668684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 318 - 460
Target Start/End: Complemental strand, 6779970 - 6779831
Alignment:
Q  318 tggtttcaggttatacttctgtttcaagagattgaaggagtagatgtatgcatttttggaatgtatgtccaggaatttggctctgaatgcggcggcaatc 417  Q
    |||||| ||||||| ||||| |||||  ||||||||||||  ||||||||||| |||| ||||||||||||||| | ||| || ||||   | ||||||     
T  6779970 tggttttaggttattcttctatttcagaagattgaaggagcggatgtatgcatatttgcaatgtatgtccaggagtatggatcggaat---gtggcaata 6779874  T
Q  418 ccaatcagcgttgtgtatacatatcatatcttgattccgtcaa 460  Q
    ||||||| || |||||||| || |||||||| ||||| |||||    
T  6779873 ccaatcaacgatgtgtatatatttcatatctcgattctgtcaa 6779831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 6766132 - 6766091
Alignment:
Q  1 aagtaatatgtatgttgtatgtgggtgtagctaggtcatttt 42  Q
    |||||| |||||||||||||||| ||||||||||||||||||    
T  6766132 aagtaacatgtatgttgtatgtgtgtgtagctaggtcatttt 6766091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 6775084 - 6775043
Alignment:
Q  1 aagtaatatgtatgttgtatgtgggtgtagctaggtcatttt 42  Q
    |||||||||||||||| |||||| ||||||||||||||||||    
T  6775084 aagtaatatgtatgttctatgtgtgtgtagctaggtcatttt 6775043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 409
Target Start/End: Original strand, 9866416 - 9866457
Alignment:
Q  368 catttttggaatgtatgtccaggaatttggctctgaatgcgg 409  Q
    |||||||||||||||||| ||||| |||||||| ||||||||    
T  9866416 catttttggaatgtatgttcaggagtttggctccgaatgcgg 9866457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 157; Significance: 3e-83; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 58 - 266
Target Start/End: Complemental strand, 6162874 - 6162666
Alignment:
Q  58 tattgacttggaaattctagattatttacttatgtgccttgaatcactgcaaaattgcaggttttagcagcggaaagtctttcaattagagaagtgctat 157  Q
    |||||| ||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  6162874 tattgatttgaaaattctagattatttacttatgtgtcttgaattactgcaaaattgcaggttttagcagcagaaagtctttcaattagagaagtgccat 6162775  T
Q  158 ctgtcgacaaacaattgaaagtgaataaacagtttctggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagtatgttcagt 257  Q
    || ||||||| ||||||||||||||||| ||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||| |||||||    
T  6162774 ctatcgacaagcaattgaaagtgaataagcagtttctggacatcatcccataagagaattaccctgctgaattctcttatagatcaagagtaagttcagt 6162675  T
Q  258 ggtttatca 266  Q
    |||||||||    
T  6162674 ggtttatca 6162666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 77 - 266
Target Start/End: Complemental strand, 36848464 - 36848275
Alignment:
Q  77 gattatttacttatgtgccttgaatcactgcaaaattgcaggttttagcagcggaaagtctttcaattagagaagtgctatctgtcgacaaacaattgaa 176  Q
    ||||||||||||  ||| ||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||| ||||||||    
T  36848464 gattatttacttgcgtggcttgaattactgcaaaattgcaggttttagcagcagaaaatctttcaattagagaagttctatctgtcgacaagcaattgaa 36848365  T
Q  177 agtgaataaacagtttctggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagtatgttcagtggtttatca 266  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||    
T  36848364 agtgaataagcagtttctggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagtaagtccaatggtttatca 36848275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 285 - 466
Target Start/End: Complemental strand, 36848213 - 36848033
Alignment:
Q  285 ctaatatgtctcag--gatttaatagaagttcccttggtttcaggttatacttctgtttcaagagattgaaggagtagatgtatgcatttttggaatgta 382  Q
    ||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||  | |||||||||| ||||||||||||||||||||||||    
T  36848213 ctaatatgtctcagaggatttaataaaagttcccttggtttcaggttatacttctgtttcagaaaattgaaggagcagatgtatgcatttttggaatgta 36848114  T
Q  383 tgtccaggaatttggctctgaatgcggcggcaatcccaatcagcgttgtgtatacatatcatatcttgattccgtcaagtattt 466  Q
    |||||||||||||||||||||||   || ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  36848113 tgtccaggaatttggctctgaat---gcagcaatcccaatcagcattgtgtatacatttcatatcttgattccgtcaagtattt 36848033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 300 - 466
Target Start/End: Complemental strand, 6162579 - 6162416
Alignment:
Q  300 atttaatagaagttcccttggtttcaggttatacttctgtttcaagagattgaaggagtagatgtatgcatttttggaatgtatgtccaggaatttggct 399  Q
    ||||||||||||||| || ||||||||||||| |||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6162579 atttaatagaagttctctcggtttcaggttattcttctgtttcagcagattgaaggagcagatgtatgcatttttggaatgtatgtccaggaatttggct 6162480  T
Q  400 ctgaatgcggcggcaatcccaatcagcgttgtgtatacatatcatatcttgattccgtcaagtattt 466  Q
    |||||||   ||||||||||||||| |||||| ||| |||||||||||||||||| |||||||||||    
T  6162479 ctgaatg---cggcaatcccaatcaacgttgtctatgcatatcatatcttgattctgtcaagtattt 6162416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 69 - 167
Target Start/End: Complemental strand, 36859848 - 36859750
Alignment:
Q  69 aaattctagattatttacttatgtgccttgaatcactgcaaaattgcaggttttagcagcggaaagtctttcaattagagaagtgctatctgtcgacaa 167  Q
    |||||||||||| ||||| |||||| | |||||  ||||||||||||||||||||||||  |||| |||||||||||||||| ||||||||||||||||    
T  36859848 aaattctagattctttacatatgtggcatgaattgctgcaaaattgcaggttttagcagaagaaaatctttcaattagagaaatgctatctgtcgacaa 36859750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 285 - 362
Target Start/End: Complemental strand, 36859614 - 36859535
Alignment:
Q  285 ctaatatgtctc--aggatttaatagaagttcccttggtttcaggttatacttctgtttcaagagattgaaggagtagat 362  Q
    ||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||  |  ||||||||||||||    
T  36859614 ctaatatgtctcggaggatttaatagaagttcccttggtttcatgttatacttctgtttcagaaatttgaaggagtagat 36859535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 6163484 - 6163424
Alignment:
Q  189 gtttctggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagta 249  Q
    |||||||||||| || ||||| |||||||||||| ||||||||||||||||||||||||||    
T  6163484 gtttctggacattattccagatgagaattaccctgctgaattctcttatagatcaagagta 6163424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 201 - 255
Target Start/End: Complemental strand, 36859748 - 36859694
Alignment:
Q  201 catcccagaggagaattaccctactgaattctcttatagatcaagagtatgttca 255  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||| |||||    
T  36859748 catcccggaggagaattaccctactgaattatcttatagatcaagagtaagttca 36859694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 143; Significance: 7e-75; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 58 - 264
Target Start/End: Original strand, 49881263 - 49881469
Alignment:
Q  58 tattgacttggaaattctagattatttacttatgtgccttgaatcactgcaaaattgcaggttttagcagcggaaagtctttcaattagagaagtgctat 157  Q
    |||||| ||| |||||||||||||||||| |||||||||||||| |||||||||||| |||||| |||||| ||||||||||| |||||||||||| |||    
T  49881263 tattgatttgaaaattctagattatttacgtatgtgccttgaattactgcaaaattgtaggtttcagcagcagaaagtctttctattagagaagtgttat 49881362  T
Q  158 ctgtcgacaaacaattgaaagtgaataaacagtttctggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagtatgttcagt 257  Q
    |||||||||||||||||||||||||||| | ||||||||||||||| |||||||| ||||||||| | |||||||||||||||||||||||| |||||||    
T  49881363 ctgtcgacaaacaattgaaagtgaataagctgtttctggacatcattccagaggaaaattaccctgccgaattctcttatagatcaagagtaagttcagt 49881462  T
Q  258 ggtttat 264  Q
    |||||||    
T  49881463 ggtttat 49881469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 65 - 266
Target Start/End: Original strand, 46521667 - 46521868
Alignment:
Q  65 ttggaaattctagattatttacttatgtgccttgaatcactgcaaaattgcaggttttagcagcggaaagtctttcaattagagaagtgctatctgtcga 164  Q
    |||||||||||| ||||||||||||||| || | ||| | |||||||||| ||||| |||| ||  || ||||||| |||||||||||| |||| |||||    
T  46521667 ttggaaattctatattatttacttatgtaccatcaattattgcaaaattgtaggttatagctgcaaaaggtctttctattagagaagtgttatccgtcga 46521766  T
Q  165 caaacaattgaaagtgaataaacagtttctggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagtatgttcagtggtttat 264  Q
    ||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||    
T  46521767 caaacaattgaaagtgaataagcagtttctggatatcattccagaggagaattaccctgctgaattctcttatagatcaagagtaagttcagtggattat 46521866  T
Q  265 ca 266  Q
    ||    
T  46521867 ca 46521868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 299 - 466
Target Start/End: Original strand, 46521961 - 46522125
Alignment:
Q  299 gatttaatagaagttcccttggtttcaggttatacttctgtttcaagagattgaaggagtagatgtatgcatttttggaatgtatgtccaggaatttggc 398  Q
    |||||||||||||||  |||||||||||||||| |||||||||||  |||||||||||| |||| |||||||||||||||||||||||||||| ||||||    
T  46521961 gatttaatagaagtttgcttggtttcaggttattcttctgtttcagcagattgaaggagcagatatatgcatttttggaatgtatgtccaggagtttggc 46522060  T
Q  399 tctgaatgcggcggcaatcccaatcagcgttgtgtatacatatcatatcttgattccgtcaagtattt 466  Q
    |||||||   |||| ||||| |||||||||||||||||||| |||||||||||||| |||||||||||    
T  46522061 tctgaat---gcggaaatccgaatcagcgttgtgtatacatttcatatcttgattctgtcaagtattt 46522125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 321 - 466
Target Start/End: Original strand, 49881548 - 49881690
Alignment:
Q  321 tttcaggttatacttctgtttcaagagattgaaggagtagatgtatgcatttttggaatgtatgtccaggaatttggctctgaatgcggcggcaatccca 420  Q
    ||||||||||| |||||||||||  ||||||||||||||||| ||||||||||||||||||| | |||||| || ||||| ||||   |||||||||| |    
T  49881548 tttcaggttattcttctgtttcagcagattgaaggagtagatatatgcatttttggaatgtacgcccaggagttcggctccgaat---gcggcaatccaa 49881644  T
Q  421 atcagcgttgtgtatacatatcatatcttgattccgtcaagtattt 466  Q
    |||||||||||||| |||| |||||||||||||| |||||||||||    
T  49881645 atcagcgttgtgtacacatttcatatcttgattctgtcaagtattt 49881690  T

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Target: chr1 (Bit Score: 106; Significance: 8e-53; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 299 - 466
Target Start/End: Original strand, 18135526 - 18135690
Alignment:
Q  299 gatttaatagaagttcccttggtttcaggttatacttctgtttcaagagattgaaggagtagatgtatgcatttttggaatgtatgtccaggaatttggc 398  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||  | |||||||||| |||| ||||||||||||||||||| |||||||||||||||    
T  18135526 gatttaatataagttcccttggtttcaggttattcttctgtttcagcatattgaaggagcagatatatgcatttttggaatgtacgtccaggaatttggc 18135625  T
Q  399 tctgaatgcggcggcaatcccaatcagcgttgtgtatacatatcatatcttgattccgtcaagtattt 466  Q
    |||||||   ||||||| ||||||||||||||||| ||||| ||||||||||||||| ||||||||||    
T  18135626 tctgaat---gcggcaaccccaatcagcgttgtgtctacatttcatatcttgattccttcaagtattt 18135690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 111 - 253
Target Start/End: Original strand, 18135288 - 18135430
Alignment:
Q  111 attgcaggttttagcagcggaaagtctttcaattagagaagtgctatctgtcgacaaacaattgaaagtgaataaacagtttctggacatcatcccagag 210  Q
    |||| ||||||||||||| |||| |||||   ||||||||||  ||| ||| ||||| ||||||||||||| |||  |||||||||||||||||||  ||    
T  18135288 attgtaggttttagcagcagaaaatctttatgttagagaagttgtatttgttgacaagcaattgaaagtgattaagaagtttctggacatcatccctcag 18135387  T
Q  211 gagaattaccctactgaattctcttatagatcaagagtatgtt 253  Q
    |||||||||||| ||||||||||||||||| ||||||||||||    
T  18135388 gagaattaccctgctgaattctcttatagagcaagagtatgtt 18135430  T

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Target: scaffold0299 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 13209 - 13250
Alignment:
Q  1 aagtaatatgtatgttgtatgtgggtgtagctaggtcatttt 42  Q
    |||||| |||| ||||||||||| ||||||||||||||||||    
T  13209 aagtaacatgtgtgttgtatgtgtgtgtagctaggtcatttt 13250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 425
Target Start/End: Original strand, 13409 - 13453
Alignment:
Q  378 atgtatgtccaggaatttggctctgaatgcggcggcaatcccaatcag 425  Q
    |||||||||||||||||||||||| |||   |||||||||||||||||    
T  13409 atgtatgtccaggaatttggctcttaat---gcggcaatcccaatcag 13453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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