View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19233_low_5 (Length: 441)
Name: NF19233_low_5
Description: NF19233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19233_low_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 80 - 441
Target Start/End: Complemental strand, 54088258 - 54087900
Alignment:
| Q |
80 |
aggtcctttcttgctgctctactttcacatgcaataacattcattgcaacaagcaaagaaacaacagctaaaatcttcattgaagccattgtcacggatc |
179 |
Q |
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| T |
54088258 |
aggtcctttcttgctgctctactttcacatgcaataacattcattgcaacaagcaaagaaacaacagctaaaatcttcattgaagccattgtcacggatc |
54088159 |
T |
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| Q |
180 |
aaacaataaaaggcaaatatatatatcagcacgtttgaacttatctaaagccaatattgatttagagattgaaatgttttaattgtagagaagtatgttg |
279 |
Q |
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| T |
54088158 |
aaacaataaaaggcaaatatatatatcagcacgtttgaacttatctaaagccaatattgatttagagattgaaatgttttaattgtagagaagtatgttg |
54088059 |
T |
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| Q |
280 |
agatatgcatgctatttatagatgagattatgatagctagcgctaatgtacgtcggcaagcatgtgtaaaagctggaggtgtgcatgcgtatggaaatgt |
379 |
Q |
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| T |
54088058 |
agatatgcatgctatttatagatgagattatga----tagcgctaatgtacgtcggcaagcatgtgtaaaagctagaggtgtgcatgcgtatggaaatgg |
54087963 |
T |
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| Q |
380 |
gacaatgtagggagtgggggtgtcacttatgacataagtcaac-tttttctggtggaaatttt |
441 |
Q |
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| T |
54087962 |
gacaatgtaggaagtgggggtgtcacttgtggcacaagtcaacttttttctggtggaaatttt |
54087900 |
T |
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