View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19234_high_7 (Length: 361)
Name: NF19234_high_7
Description: NF19234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19234_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 350
Target Start/End: Complemental strand, 34252862 - 34252530
Alignment:
| Q |
18 |
ctctgaacacacaggtcaaccaggctcctaaattcctcctgcttgtttgaaggtgctttcgacagtagtagttctagcatttgttttgaatatgcataat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34252862 |
ctctgaacacacaggtcaaccaggctcctaaattcctcctgcttgtttgaaggtgctttcgacagtagtagttctagcatttgttttgaatatgcataat |
34252763 |
T |
|
| Q |
118 |
tttgaacctccatatttcttttgatggcagttcgaatgcaatttattctgtgcttagcaagaagaggtaatgaaccgagatgacgcgaaagtcttgccat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34252762 |
tttgaacctccatatttcttttgatggcagttcgaatgcaatttattctgtgcttagcaagaagaggcaatgaaccgagatgacgcgaaagtcttgccat |
34252663 |
T |
|
| Q |
218 |
ctcatcttttgcactgattgcacttgggccatggactctctgcagacgtcctatttcctgcaataacaaaagatattttcagtaatccaatgtattacta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34252662 |
ctcatcttttgcactgattgcacttgggccatggactctctgcagacgtcctatttcctgcaataacaaaagatattttcagtaatccaatgtattacta |
34252563 |
T |
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| Q |
318 |
aactcaaaagtgaaaacaattatggaggttcat |
350 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
34252562 |
aactcaaaagtgaaaacaattatggaggttcat |
34252530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 6569313 - 6569574
Alignment:
| Q |
18 |
ctctgaacacacaggtcaaccaggctcctaaattcctcctgcttgtttgaaggtgctttcgacagtagtagttctagcatttgttttgaatatgcataat |
117 |
Q |
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||||||||||||| ||| | ||||||||| ||||||||||||||| ||| ||||||||| ||||||||||||||||||||||| || ||||||||||||| |
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| T |
6569313 |
ctctgaacacacaagtccatcaggctcctgaattcctcctgcttgcttggaggtgctttggacagtagtagttctagcatttgcttggaatatgcataat |
6569412 |
T |
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| Q |
118 |
tttgaacctccatatttcttttgatggcagttcgaatgcaatttattctgtgcttagcaagaagaggtaatgaaccgagatgacgcgaaagtcttgccat |
217 |
Q |
| |
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|||| |||||||| |||| ||| ||||||||||||||||||||||||||||| ||||| | ||||||||||||||| ||||| || |||||||||||||| |
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| T |
6569413 |
tttgcacctccatgtttcgttttatggcagttcgaatgcaatttattctgtgtttagccaaaagaggtaatgaacccagatggcgagaaagtcttgccat |
6569512 |
T |
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| Q |
218 |
ctcatcttttgcactgattgcacttgggccatggactctctgcagacgtcctatttcctgca |
279 |
Q |
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||| ||||||||||||||||| |||| ||| ||||| |||||| |||||| |||||||||| |
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| T |
6569513 |
ctcgtcttttgcactgattgcccttgaaccaaggactttctgcaaacgtccaatttcctgca |
6569574 |
T |
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