View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19234_high_8 (Length: 308)

Name: NF19234_high_8
Description: NF19234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19234_high_8
NF19234_high_8
[»] chr8 (1 HSPs)
chr8 (24-308)||(13455040-13455322)


Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 24 - 308
Target Start/End: Original strand, 13455040 - 13455322
Alignment:
Q  24 agtttttcctctcttgtaaaaatatatgagcacggtccaccacagcactaacattcacatttttgataccccacacaaaagcacccatttctgcatgtga 123  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13455040 agtttttcctctcttgtaaa--tatatgagcacggtccaccacagcactaacattcacatttttgataccccacacaaaagcacccatttctgcatgtga 13455137  T
Q  124 atgatcacatggttttcactcaccaacccaagtgtattatttcccttttcttttttgcaaccccacaccacagccgccagcagcttcttttatttgattt 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||   ||    
T  13455138 atgatcacatggttttcactcaccaacccaagtgtattatttcccttttcttttttgcaaccccacaccacagccgccagcagcttcctttattttcatt 13455237  T
Q  224 tttctactttaaattaagattatcgttacagtttgtattgcctttttgtcttttatacacatgctttaaatcccatcaataatgt 308  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  13455238 tttctacttcaaattaagattatcgttacagtttgtattgcctttttgtcttttatatacatgctttaaatcccatcaataatgt 13455322  T

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