View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19234_low_13 (Length: 236)
Name: NF19234_low_13
Description: NF19234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19234_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 36503803 - 36504023
Alignment:
| Q |
1 |
ataaatctgttgcagatcgaaagaaagtaatgatatcccgcgtaatacaatcattgatagaagtatacaaagaaaaacaacagtatgcaatcgctcaaaa |
100 |
Q |
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| T |
36503803 |
ataaatctgttgcagatcgaaagaaagtaatgatatcccgcgcaatacagtcattgatagaagtatacaaagaaaaacaacagtatgcaatcactcaaaa |
36503902 |
T |
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| Q |
101 |
gtttgaggaattgaagaacatcttatgaaggtgaagtcatgaaatgagatggattcacgtaatgatttgtttttgaggtctaccagtgaaagttatacca |
200 |
Q |
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| T |
36503903 |
gtttgaggaattgaagaacatcttatgaaggtgaagtcatgaaatgagatggattcacgtaatgatttgtttttgaggtctaccagtgaaaattatacca |
36504002 |
T |
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| Q |
201 |
ttcttgtaggtggaatgaaca |
221 |
Q |
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|||| |||||||||||||||| |
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| T |
36504003 |
ttctagtaggtggaatgaaca |
36504023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 34646651 - 34646576
Alignment:
| Q |
1 |
ataaatctgttgcagatcgaaagaaagtaatgatatcccgcgtaatacaatcattgatagaagtatacaaagaaaa |
76 |
Q |
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|||||| ||||||||| |||||||||||||||||||| |||| ||||||| ||||||||| | ||||||||||| |
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| T |
34646651 |
ataaatttgttgcagaccgaaagaaagtaatgatatcaagcgtgatacaattattgatagatgagtacaaagaaaa |
34646576 |
T |
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