View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19234_low_5 (Length: 438)
Name: NF19234_low_5
Description: NF19234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19234_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 41 - 428
Target Start/End: Original strand, 43129007 - 43129404
Alignment:
| Q |
41 |
ttgatcacatgaataaaacctcacaaaatcacatgaaataagactaataataatggcatgaagtaaaaatagaatagaagaaat-----------aacca |
129 |
Q |
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| T |
43129007 |
ttgatcacatgaataaaacctcacaaaatcagatgaaataagactaataataatggcatgaagtaaaaatagaatagaagaaatcaccaagaaataacca |
43129106 |
T |
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| Q |
130 |
atagcagggcataagtatagttccaatgtctttcaatatttatttgataattcttaaaacattatttgagcttatagattattctcactttcattgcctt |
229 |
Q |
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| T |
43129107 |
atagcagggcataagtatagttccaatgtctttcaatatttatttgataattcttaaaacattatttgagcttatagattattctcactttcattgcctt |
43129206 |
T |
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| Q |
230 |
caaaatggagcccttagaattgttggcttagtaagtccactccatgggtaaatttatcccagctggcagtgaaggatcgtagcattcctcctccttcttc |
329 |
Q |
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| T |
43129207 |
caaaatggagcc-ttagaattgttggcttagtaagtccactccatgggtaaatttatcccagctggcagtgaaggatcgtagcattcctcctccttcttc |
43129305 |
T |
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| Q |
330 |
accttcactgagccaccattcttcccttttgagcccnnnnnnnnnnnnnnnnnctgagccttcgttgagccttcatggacagcatttttgttgttgtct |
428 |
Q |
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| T |
43129306 |
accttcactgagccaccattcttcccttttgagccctttttcttttttcttttctgagccttcgttgagccttcatggacagcatttttgttgttgtct |
43129404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 250 - 362
Target Start/End: Original strand, 43139484 - 43139595
Alignment:
| Q |
250 |
tgttggcttagtaagtccactccatgggtaaatttatcccagctggcagtgaaggatcgtagcattcctcctccttcttcaccttcactgagccaccatt |
349 |
Q |
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| T |
43139484 |
tgttggattagtaagtccactccgtgggtaaaactattccaggaggcagagaatgatcatgacattcctccttctt-ttcaccttctctgagtcaccatt |
43139582 |
T |
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| Q |
350 |
cttcccttttgag |
362 |
Q |
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| T |
43139583 |
cttcccttttgag |
43139595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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