View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19234_low_6 (Length: 421)
Name: NF19234_low_6
Description: NF19234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19234_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 14 - 408
Target Start/End: Complemental strand, 26752291 - 26751897
Alignment:
| Q |
14 |
acaatagtagtagaatcgcgtcgttggattcatttggtagttttagttcatctgatgattttgtttttaatactgctgattatggaacttttttgcaacg |
113 |
Q |
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| T |
26752291 |
acaatagtagtagaatcgcgtcgttggattcgtttggtagttttagttcttctgatgattttgtttttaatactgctgattatggaacttttttgcaacg |
26752192 |
T |
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| Q |
114 |
tagacttacacttgatcatgatggtaacgttcgcatttatagtagaaaagatgaggaacagggttggtttgtttcgggtcaatttcgtcaacaaccttgt |
213 |
Q |
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| T |
26752191 |
tagacttacacttgatcatgatggtaacgttcgcatttatagtagaaaagatgaggaacagggttggtttgtttcgggtcaatttcgtcaacaaccttgt |
26752092 |
T |
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| Q |
214 |
tttattcatggaatttgtgggcctaatagtacttgtagtaatgatccattgactggtagaaagtgttcttgtctacctggttatgtttggattaatgatc |
313 |
Q |
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| T |
26752091 |
tttattcatggaatttgtgggcctaatagtacttgtagtaatgatccattgactggtagaaagtgttcttgtctacctggttatgtttggattaatgatc |
26751992 |
T |
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| Q |
314 |
aagatagttctcaaggttgtagacccaattttgaactttcttgtagtaacaaaactcatgatgagttaagttttttggctttgtctcatgttgat |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
26751991 |
aagatagttctcaaggttgtagacccaattttgaactttcttgcagtaacaagactcatgatgagttaagttttttggctttgtctcatgttgat |
26751897 |
T |
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