View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19234_low_9 (Length: 304)
Name: NF19234_low_9
Description: NF19234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19234_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 49 - 279
Target Start/End: Original strand, 22765218 - 22765450
Alignment:
| Q |
49 |
aattcgaaggtaaactaataaatgataccttaatcaaccagcaacggagaaaattcagtgatggtgataaatcctttgcgatcagtgttatcatttgttt |
148 |
Q |
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| T |
22765218 |
aatttgaaggtaaactaataaatgataccttaatcaatcagcaacggagaaaattcagtgatggtgataaatcctttgcgatcagtgttatcatttgttg |
22765317 |
T |
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| Q |
149 |
ctttgttatgcgtggtatatcaataaagataaattaaagcacaacaagaagaaaaagaagat--cacacaccaccacacctgaggaagatcccgggcaat |
246 |
Q |
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| T |
22765318 |
ctttgctatgcgtggtatatcaataaagataaattaaagcacaacaagaagaaaaagaagatcacacacaccaccacacctgaggaagatcccgggcaat |
22765417 |
T |
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| Q |
247 |
tcccgtgcgatcttcctcagaaacaacaaaata |
279 |
Q |
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| T |
22765418 |
tcccgtgcgatcttcctcagaaacaacaaaata |
22765450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 88 - 279
Target Start/End: Original strand, 33081095 - 33081287
Alignment:
| Q |
88 |
agcaacggagaaaattcagtgatggtgataaatcctttgcgatcagtgttatcatttgtttctttgttatgcgtggtatatcaataaagataaattaaag |
187 |
Q |
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| T |
33081095 |
agcaatggagaaaatcctgtgatagtaataaatcctttacgatcagtgttatgatttgtttctttgtgatgcgtggtatgtcaataaagataaaagaaag |
33081194 |
T |
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| Q |
188 |
cacaacaagaagaaaaagaagat-cacacaccaccacacctgaggaagatcccgggcaattcccgtgcgatcttcctcagaaacaacaaaata |
279 |
Q |
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| T |
33081195 |
cataacgagaagaagaagatcacacacacaccaccacacctgaggaagatcccgggcaattcccgtgcgatcttcctcagaaacaacaaaata |
33081287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 59 - 265
Target Start/End: Original strand, 33095609 - 33095825
Alignment:
| Q |
59 |
taaactaataaatgataccttaatcaaccagcaacggagaaaattcagtgatggtgataaatcctttgcgatcagtgttatcatttgtttct-------t |
151 |
Q |
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|||| ||||||||||||||||| ||| || ||||| ||||||| ||||||| ||||||||||||||| | |||||||| |||||||||| | |
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| T |
33095609 |
taaagtaataaatgataccttattcagtcaacaacgtagaaaatccagtgatagtgataaatcctttgtggcaagtgttataatttgtttctttgtgaat |
33095708 |
T |
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| Q |
152 |
tgttatgcgtggtatatcaataaagataaattaaagcacaacaagaagaaaaagaaga---tcacacaccaccacacctgaggaagatcccgggcaattc |
248 |
Q |
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| T |
33095709 |
tgtgatgcgtggtatatcaataaagataaacgaaagcataaccagaagaagaagatcacacacacacaccaccacagcaggggaagatcccgggaaattc |
33095808 |
T |
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| Q |
249 |
ccgtgcgatcttcctca |
265 |
Q |
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| T |
33095809 |
ccatgcgatcttcctca |
33095825 |
T |
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