View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19235_high_3 (Length: 266)
Name: NF19235_high_3
Description: NF19235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19235_high_3 |
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| [»] scaffold0042 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 168 - 246
Target Start/End: Complemental strand, 52800484 - 52800406
Alignment:
| Q |
168 |
gaggaaaaagatgatttgatgaacggtgattcagagaagttcgattcaatccttcatgagttcgataagttacacgagc |
246 |
Q |
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| T |
52800484 |
gaggaaaaagatgatttgatgaacggtgattcagagaagttcgattcaatccttcacgagttcgataagttacatgagc |
52800406 |
T |
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Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 52800618 - 52800548
Alignment:
| Q |
98 |
ggagcatcaggactccagtatttgcagaatcatccgctccgagttcttcaaactcaagtctcttatcaatg |
168 |
Q |
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| T |
52800618 |
ggagaatcaggactccagtattcgcagaatcatccgctccgagttcttcaaactcaagtctcttatcaatg |
52800548 |
T |
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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 52800694 - 52800651
Alignment:
| Q |
4 |
tgtttcgtcgcgttaagagagaacgcctcaacgtcgccgccgcc |
47 |
Q |
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| T |
52800694 |
tgtttcgtcgcgttaagagagaacgcctcaacgccgccgccgcc |
52800651 |
T |
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Target: scaffold0042 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 32140 - 32070
Alignment:
| Q |
98 |
ggagcatcaggactccagtatttgcagaatcatccgctccgagttcttcaaactcaagtctcttatcaatg |
168 |
Q |
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| T |
32140 |
ggagcatcaggactccaacattcgcagaatcatccgctccgagttcttcaaactcaagtctcttatcaatg |
32070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 246
Target Start/End: Complemental strand, 31984 - 31910
Alignment:
| Q |
172 |
aaaaagatgatttgatgaacggtgattcagagaagttcgattcaatccttcatgagttcgataagttacacgagc |
246 |
Q |
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| T |
31984 |
aaaaagatgatttaatgaacactgcttcggacaagttcgattcaatccttcatgacttcgacaagttagacgagc |
31910 |
T |
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