View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19235_high_4 (Length: 240)
Name: NF19235_high_4
Description: NF19235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19235_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 110 - 224
Target Start/End: Complemental strand, 53278350 - 53278236
Alignment:
| Q |
110 |
tgaatgaataacttacgtagctaagaagaaaagagccattgtctccttttttaatttctcctcgtattcatcgtcatcagcagcataatcatcctattat |
209 |
Q |
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| T |
53278350 |
tgaataaataacttacgtagctaagaagaaaagagccattgtctccttttttaatttctcctcgtattcatcgtcatcagcagcataatcatcctattat |
53278251 |
T |
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| Q |
210 |
acaaatacaaaacat |
224 |
Q |
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||||||||||||||| |
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| T |
53278250 |
acaaatacaaaacat |
53278236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 53278447 - 53278378
Alignment:
| Q |
13 |
aaaataatattacaattatcaacaaaaatagctcaagacacacacaaagatgcatataactcaatttttc |
82 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
53278447 |
aaaataatattacaattatcaacaaaaatagctgaagacacacacaaagatgcatataactcaatttttc |
53278378 |
T |
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