View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19235_low_2 (Length: 352)

Name: NF19235_low_2
Description: NF19235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19235_low_2
NF19235_low_2
[»] chr8 (6 HSPs)
chr8 (85-330)||(19786494-19786739)
chr8 (104-172)||(24110765-24110833)
chr8 (17-69)||(19786912-19786964)
chr8 (104-171)||(13315101-13315168)
chr8 (102-171)||(14656856-14656923)
chr8 (17-61)||(25182294-25182338)
[»] chr7 (15 HSPs)
chr7 (103-171)||(1848333-1848401)
chr7 (104-171)||(17151859-17151926)
chr7 (104-171)||(2563740-2563807)
chr7 (104-171)||(9731737-9731803)
chr7 (102-171)||(1587603-1587672)
chr7 (102-171)||(8313501-8313570)
chr7 (111-171)||(4986477-4986537)
chr7 (111-171)||(4990575-4990635)
chr7 (104-171)||(6042383-6042450)
chr7 (105-171)||(16365627-16365693)
chr7 (132-175)||(3734514-3734557)
chr7 (104-171)||(20582166-20582233)
chr7 (13-59)||(15869785-15869831)
chr7 (16-61)||(3734784-3734829)
chr7 (131-171)||(5108488-5108528)
[»] chr5 (15 HSPs)
chr5 (102-178)||(24267062-24267138)
chr5 (102-178)||(24343693-24343769)
chr5 (252-333)||(18220204-18220285)
chr5 (100-171)||(20315551-20315622)
chr5 (104-170)||(23265085-23265151)
chr5 (102-171)||(17769504-17769573)
chr5 (102-154)||(18208356-18208408)
chr5 (102-174)||(20744919-20744990)
chr5 (104-171)||(39434379-39434446)
chr5 (256-314)||(20745058-20745116)
chr5 (129-171)||(24187125-24187167)
chr5 (102-180)||(25934609-25934687)
chr5 (103-144)||(20715894-20715935)
chr5 (131-171)||(15373480-15373520)
chr5 (131-171)||(17431805-17431845)
[»] chr6 (7 HSPs)
chr6 (102-184)||(28586139-28586221)
chr6 (104-171)||(22410425-22410492)
chr6 (98-191)||(34478425-34478519)
chr6 (105-163)||(8241207-8241265)
chr6 (103-171)||(15466292-15466360)
chr6 (130-171)||(22566295-22566336)
chr6 (155-188)||(24252291-24252324)
[»] chr2 (6 HSPs)
chr2 (102-188)||(18932102-18932188)
chr2 (102-181)||(8503179-8503258)
chr2 (104-163)||(31805010-31805069)
chr2 (102-188)||(32440105-32440191)
chr2 (20-65)||(25885331-25885376)
chr2 (130-171)||(28925456-28925497)
[»] chr4 (8 HSPs)
chr4 (102-171)||(17216739-17216808)
chr4 (104-171)||(11935114-11935180)
chr4 (104-171)||(13128984-13129051)
chr4 (102-164)||(15164696-15164758)
chr4 (13-65)||(14649079-14649130)
chr4 (236-298)||(12318195-12318258)
chr4 (103-144)||(12840662-12840703)
chr4 (236-325)||(13129166-13129255)
[»] chr3 (11 HSPs)
chr3 (102-175)||(7147906-7147979)
chr3 (270-334)||(7147719-7147783)
chr3 (104-171)||(932663-932730)
chr3 (102-172)||(5508257-5508327)
chr3 (98-172)||(21019700-21019774)
chr3 (102-188)||(12805998-12806084)
chr3 (104-169)||(8889295-8889360)
chr3 (103-143)||(8713774-8713814)
chr3 (103-143)||(9065661-9065701)
chr3 (107-171)||(17155793-17155857)
chr3 (267-315)||(19576534-19576582)
[»] chr1 (5 HSPs)
chr1 (205-315)||(18830222-18830335)
chr1 (104-171)||(18830390-18830457)
chr1 (102-175)||(13135248-13135321)
chr1 (88-170)||(15808101-15808183)
chr1 (102-184)||(24308111-24308193)
[»] scaffold0056 (1 HSPs)
scaffold0056 (102-171)||(24907-24976)
[»] scaffold0024 (1 HSPs)
scaffold0024 (103-171)||(39506-39574)
[»] scaffold0005 (1 HSPs)
scaffold0005 (13-65)||(168162-168213)
[»] scaffold0606 (1 HSPs)
scaffold0606 (102-172)||(7796-7866)
[»] scaffold0008 (1 HSPs)
scaffold0008 (13-59)||(55052-55097)
[»] scaffold0394 (1 HSPs)
scaffold0394 (102-171)||(14016-14085)
[»] scaffold0034 (1 HSPs)
scaffold0034 (106-171)||(76304-76369)
[»] scaffold0351 (2 HSPs)
scaffold0351 (29-61)||(152-184)
scaffold0351 (29-65)||(5642-5678)
[»] scaffold0002 (1 HSPs)
scaffold0002 (29-61)||(114677-114709)


Alignment Details
Target: chr8 (Bit Score: 150; Significance: 3e-79; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 85 - 330
Target Start/End: Complemental strand, 19786739 - 19786494
Alignment:
Q  85 tatacttgtttattccaaccatcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttattcgtatatgttttt 184  Q
    ||||||||| || ||| |||||||| ||||||||||||||| |||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  19786739 tatacttgtctaatccgaccatcaaatttttggcgtcgttgccgaggaatgttgatattttcaactaagcagttcaaattacttattcgtatatgttttt 19786640  T
Q  185 atttattcnnnnnnnnnnnngggtatagtaataacaataattatgacaataattattttttattgtcactcctagaactgtgctacttgggtatttttgt 284  Q
    ||||||||            |||||||||||||| ||| ||||| |||||||||||| |||||||||||||||||||  |||||||||||||||||||||    
T  19786639 atttattcaaaaataaaaaagggtatagtaataataattattataacaataattattatttattgtcactcctagaaacgtgctacttgggtatttttgt 19786540  T
Q  285 ttatggttgtttcagggaatgaatcatggatgattttgcaacagac 330  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  19786539 ttatggttgtttcagggaacgaatcatggatgattttgcaacagac 19786494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 24110765 - 24110833
Alignment:
Q  104 catcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttattc 172  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| |||||||||||||    
T  24110765 catcaagtttttggcgccgttgtcggggattgttgatattttcgactaaacaatttaaattacttattc 24110833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 19786964 - 19786912
Alignment:
Q  17 taaatagggggaattcaaagagtcctaaccattgtttccttttctacaatcaa 69  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19786964 taaataaggggaattcaaagagtcctaaccattgtttccttttctacaatcaa 19786912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 13315101 - 13315168
Alignment:
Q  104 catcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttatt 171  Q
    ||||||||||||||||  |||  || ||||||||||||||||||||||||||||| ||||||||||||    
T  13315101 catcaagtttttggcgctgtttccggggattgttgatattttcgactaagcaatttaaattacttatt 13315168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 14656923 - 14656856
Alignment:
Q  102 accatcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttatt 171  Q
    ||||||||||||||||||   ||  || ||||||||||||||||||||| ||||||| ||||||||||||    
T  14656923 accatcaagtttttggcgctctt--cgtggattgttgatattttcgactgagcaatttaaattacttatt 14656856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 25182294 - 25182338
Alignment:
Q  17 taaatagggggaattcaaagagtcctaaccattgtttccttttct 61  Q
    |||||| |||| ||||||||||||||||||| |||||||||||||    
T  25182294 taaatatgggggattcaaagagtcctaaccactgtttccttttct 25182338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 1848333 - 1848401
Alignment:
Q  103 ccatcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttatt 171  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  1848333 ccatcaagtttttggcgccgttgtcgaggattgttgatattttcggctaagcaatttaaattacttatt 1848401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 17151859 - 17151926
Alignment:
Q  104 catcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttatt 171  Q
    |||||||||||||||| ||||| || || ||||||||||||| |||||||||||||||||||||||||    
T  17151859 catcaagtttttggcgccgttgccgggggttgttgatatttttgactaagcaattcaaattacttatt 17151926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 2563807 - 2563740
Alignment:
Q  104 catcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttatt 171  Q
    |||||||||||||||| |||||||| ||||| |||||||||||||||||  |||| ||||||||||||    
T  2563807 catcaagtttttggcgccgttgtcggggattattgatattttcgactaaataatttaaattacttatt 2563740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 9731737 - 9731803
Alignment:
Q  104 catcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttatt 171  Q
    ||||||||||||||||  ||||||| ||||||||||||||||||||||||| ||| ||||||||||||    
T  9731737 catcaagtttttggcgctgttgtcg-ggattgttgatattttcgactaagcgattgaaattacttatt 9731803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 1587672 - 1587603
Alignment:
Q  102 accatcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttatt 171  Q
    |||||||||||||||| | ||||| ||  |||||||||| ||||||||||||||||||||| ||||||||    
T  1587672 accatcaagtttttggtgccgttgccggagattgttgatgttttcgactaagcaattcaaagtacttatt 1587603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 102 - 171
Target Start/End: Original strand, 8313501 - 8313570
Alignment:
Q  102 accatcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttatt 171  Q
    |||||||| ||||||||| |||||  | |||||||||||||||||||||||  |||||||||||||||||    
T  8313501 accatcaaatttttggcgccgttgctggggattgttgatattttcgactaaataattcaaattacttatt 8313570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 4986537 - 4986477
Alignment:
Q  111 tttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttatt 171  Q
    |||||||||| |||| ||  ||||||| |||||||||||||||||||||||||||||||||    
T  4986537 tttttggcgtagttgccggagattgttaatattttcgactaagcaattcaaattacttatt 4986477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 4990635 - 4990575
Alignment:
Q  111 tttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttatt 171  Q
    |||||||||| |||| ||  ||||||| |||||||||||||||||||||||||||||||||    
T  4990635 tttttggcgtagttgccggagattgttaatattttcgactaagcaattcaaattacttatt 4990575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 6042450 - 6042383
Alignment:
Q  104 catcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttatt 171  Q
    |||||||||||||||| ||||| |   |||||||||||||||||||||||| | ||||||||||||||    
T  6042450 catcaagtttttggcgccgttgcccgagattgttgatattttcgactaagcgaatcaaattacttatt 6042383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 16365693 - 16365627
Alignment:
Q  105 atcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttatt 171  Q
    ||||||||||| ||| |||||  |  |||||||||||||||||||||||||||| ||||||||||||    
T  16365693 atcaagtttttagcgccgttgctggagattgttgatattttcgactaagcaatttaaattacttatt 16365627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 132 - 175
Target Start/End: Complemental strand, 3734557 - 3734514
Alignment:
Q  132 attgttgatattttcgactaagcaattcaaattacttattcgta 175  Q
    ||||||||||||||||||||| |||| |||||||| ||||||||    
T  3734557 attgttgatattttcgactaaacaatccaaattacctattcgta 3734514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 20582233 - 20582166
Alignment:
Q  104 catcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttatt 171  Q
    |||||| |||||| || ||||| || ||||||||||||||||  |||||||||||  |||||||||||    
T  20582233 catcaaatttttgtcgccgttgccggggattgttgatattttttactaagcaatttcaattacttatt 20582166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 15869831 - 15869785
Alignment:
Q  13 aatataaatagggggaattcaaagagtcctaaccattgtttcctttt 59  Q
    |||||||| |||||| |||||||||||||||||| |||||| |||||    
T  15869831 aatataaacaggggggattcaaagagtcctaaccgttgtttactttt 15869785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 3734829 - 3734784
Alignment:
Q  16 ataaatagggggaattcaaagagtcctaaccattgtttccttttct 61  Q
    |||||||||||  |||||||||||||||||||||| || |||||||    
T  3734829 ataaataggggagattcaaagagtcctaaccattgcttacttttct 3734784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 5108528 - 5108488
Alignment:
Q  131 gattgttgatattttcgactaagcaattcaaattacttatt 171  Q
    ||||||| | |||||||||||||||||| ||||||||||||    
T  5108528 gattgttaacattttcgactaagcaattaaaattacttatt 5108488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 24267062 - 24267138
Alignment:
Q  102 accatcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttattcgtatat 178  Q
    |||||||||||||||||   |||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  24267062 accatcaagtttttggcactgttgccgaggattgttgatattttcgactaagcaattcaaattacatattcctatat 24267138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 24343693 - 24343769
Alignment:
Q  102 accatcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttattcgtatat 178  Q
    |||||||||||||||||   |||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  24343693 accatcaagtttttggcactgttgccgaggattgttgatattttcgactaagcaattcaaattacatattcctatat 24343769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 252 - 333
Target Start/End: Original strand, 18220204 - 18220285
Alignment:
Q  252 actcctagaactgtgctacttgggtatttttgtttatggttgtttcagggaatgaatcatggatgattttgcaacagaccag 333  Q
    ||||||||||| ||| ||||||| |||||||||||||| ||||||| | ||| ||| |||||||||||||||||||||||||    
T  18220204 actcctagaacagtgttacttggttatttttgtttatgattgtttctgagaacgaaccatggatgattttgcaacagaccag 18220285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 100 - 171
Target Start/End: Original strand, 20315551 - 20315622
Alignment:
Q  100 caaccatcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttatt 171  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||| | ||||| ||||| ||||||    
T  20315551 caaccatcaagttttaggcgtcgttgccgaggattgttgatattttcgactgaacaatttaaattgcttatt 20315622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 104 - 170
Target Start/End: Complemental strand, 23265151 - 23265085
Alignment:
Q  104 catcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttat 170  Q
    |||||||||||||||  |||||| |  |||||||||||||||||||||||||||| |||| ||||||    
T  23265151 catcaagtttttggcaccgttgttggagattgttgatattttcgactaagcaatttaaatgacttat 23265085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 171
Target Start/End: Original strand, 17769504 - 17769573
Alignment:
Q  102 accatcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttatt 171  Q
    |||||||| ||||||| | ||||||||  |||||||||||||||  ||||||||||| ||||||||||||    
T  17769504 accatcaaatttttggtgccgttgtcggagattgttgatatttttcactaagcaatttaaattacttatt 17769573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 102 - 154
Target Start/End: Original strand, 18208356 - 18208408
Alignment:
Q  102 accatcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagc 154  Q
    ||||||||||||||||| |||||| | |||||||||||||||||||| |||||    
T  18208356 accatcaagtttttggcatcgttgccaaggattgttgatattttcgaataagc 18208408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 20744919 - 20744990
Alignment:
Q  102 accatcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttattcgt 174  Q
    ||||||||| |||| |||  ||||||| ||||||| |||||||||||||||  ||||||||||||||||||||    
T  20744919 accatcaagcttttagcgcagttgtcggggattgt-gatattttcgactaaataattcaaattacttattcgt 20744990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 39434446 - 39434379
Alignment:
Q  104 catcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttatt 171  Q
    |||||||||||||||| ||||| || | |||||||||||||| || ||| ||||| ||||||||||||    
T  39434446 catcaagtttttggcgccgttgccgggtattgttgatatttttgaataaacaatttaaattacttatt 39434379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 314
Target Start/End: Original strand, 20745058 - 20745116
Alignment:
Q  256 ctagaactgtgctacttgggtatttttgtttatggttgtttcagggaatgaatcatgga 314  Q
    ||||||| || ||||||| |||||||||||| ||||| |||||||||| |||| |||||    
T  20745058 ctagaacagttctacttgagtatttttgtttgtggttatttcagggaaagaataatgga 20745116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 24187125 - 24187167
Alignment:
Q  129 aggattgttgatattttcgactaagcaattcaaattacttatt 171  Q
    ||||||||||||| ||||||||||| |||| ||||||||||||    
T  24187125 aggattgttgatactttcgactaagaaatttaaattacttatt 24187167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 180
Target Start/End: Original strand, 25934609 - 25934687
Alignment:
Q  102 accatcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttattcgtatatgt 180  Q
    |||||||||||||||| || ||||||   |||| || |||||||||||||||  | | |||||||||||||||| ||||    
T  25934609 accatcaagtttttggtgtagttgtcagagattattaatattttcgactaagttaattaaattacttattcgtaaatgt 25934687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 144
Target Start/End: Original strand, 20715894 - 20715935
Alignment:
Q  103 ccatcaagtttttggcgtcgttgtcgaggattgttgatattt 144  Q
    ||||||| ||||||||| ||||| ||||||||||||||||||    
T  20715894 ccatcaaatttttggcgccgttgccgaggattgttgatattt 20715935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 15373480 - 15373520
Alignment:
Q  131 gattgttgatattttcgactaagcaattcaaattacttatt 171  Q
    |||||||||||||||| ||||| ||||| ||||||||||||    
T  15373480 gattgttgatattttctactaaacaatttaaattacttatt 15373520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 17431845 - 17431805
Alignment:
Q  131 gattgttgatattttcgactaagcaattcaaattacttatt 171  Q
    |||||||||||||||||| ||| ||||| ||||||||||||    
T  17431845 gattgttgatattttcgattaaacaatttaaattacttatt 17431805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 102 - 184
Target Start/End: Original strand, 28586139 - 28586221
Alignment:
Q  102 accatcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttattcgtatatgttttt 184  Q
    ||||||||||||||||| ||||||||| ||| ||||||||||||||||| || |||| ||||||||||||||||  |||||||    
T  28586139 accatcaagtttttggcatcgttgtcgtggagtgttgatattttcgactgagaaatttaaattacttattcgtaattgttttt 28586221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 22410425 - 22410492
Alignment:
Q  104 catcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttatt 171  Q
    |||||||||||||| ||||||| |  ||||||||||||| ||||||||||| ||||||||||||||||    
T  22410425 catcaagtttttggtgtcgttgccagggattgttgatatcttcgactaagcgattcaaattacttatt 22410492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 191
Target Start/End: Complemental strand, 34478519 - 34478425
Alignment:
Q  98 tccaaccatcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaag-caattcaaattacttattcgtatatgtttttatttatt 191  Q
    |||||||||||| |||||| || ||||| ||  |||||||||| |||||||| ||| ||||| |||||||||| |||||||||||||| ||||||    
T  34478519 tccaaccatcaaatttttgacgccgttgacggagattgttgatgttttcgacaaaggcaatttaaattacttaatcgtatatgtttttttttatt 34478425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 105 - 163
Target Start/End: Complemental strand, 8241265 - 8241207
Alignment:
Q  105 atcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaat 163  Q
    ||||||||||| |||||||||||| ||||||||||||||| | ||||||| ||||||||    
T  8241265 atcaagttttttgcgtcgttgtcggggattgttgatatttccaactaagcgattcaaat 8241207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 103 - 171
Target Start/End: Complemental strand, 15466360 - 15466292
Alignment:
Q  103 ccatcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttatt 171  Q
    ||||||| ||||| || |||||| | || |||||||||||||| || ||||||||||||||||||||||    
T  15466360 ccatcaatttttttgcatcgttgccaagaattgttgatatttttgattaagcaattcaaattacttatt 15466292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 171
Target Start/End: Original strand, 22566295 - 22566336
Alignment:
Q  130 ggattgttgatattttcgactaagcaattcaaattacttatt 171  Q
    ||||||||||||||||  ||||||||||||||||||||||||    
T  22566295 ggattgttgatattttttactaagcaattcaaattacttatt 22566336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 24252291 - 24252324
Alignment:
Q  155 aattcaaattacttattcgtatatgtttttattt 188  Q
    |||||||||||||||||||||| |||||||||||    
T  24252291 aattcaaattacttattcgtatctgtttttattt 24252324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 102 - 188
Target Start/End: Complemental strand, 18932188 - 18932102
Alignment:
Q  102 accatcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttattcgtatatgtttttattt 188  Q
    ||||||||||||||||||| ||||||| |||||||||||||||| | |||||||||| |||||  |||||||| | |||||||||||    
T  18932188 accatcaagtttttggcgttgttgtcggggattgttgatatttttgtctaagcaatttaaattctttattcgtgtctgtttttattt 18932102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 102 - 181
Target Start/End: Original strand, 8503179 - 8503258
Alignment:
Q  102 accatcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttattcgtatatgtt 181  Q
    ||||||| ||||| |||| |||||  | ||||||||||||||| |||||||||||||  |||||||||||||||||||||    
T  8503179 accatcatgttttgggcgccgttgctggggattgttgatatttccgactaagcaatttgaattacttattcgtatatgtt 8503258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 163
Target Start/End: Original strand, 31805010 - 31805069
Alignment:
Q  104 catcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaat 163  Q
    |||||||||||||||||||||| ||  |||||||||||||||||| ||||||||| ||||    
T  31805010 catcaagtttttggcgtcgttgccggagattgttgatattttcgattaagcaatttaaat 31805069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 102 - 188
Target Start/End: Original strand, 32440105 - 32440191
Alignment:
Q  102 accatcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttattcgtatatgtttttattt 188  Q
    ||||||||||||||| ||| ||||  |||||| | |||||||||| |||| |||||| |||||| |||||||||  |||||||||||    
T  32440105 accatcaagtttttgacgttgttgctgaggatggatgatattttcaactacgcaatttaaattatttattcgtaattgtttttattt 32440191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 25885331 - 25885376
Alignment:
Q  20 atagggggaattcaaagagtcctaaccattgtttccttttctacaa 65  Q
    |||||||||||||||||||||||||||| || || |||||||||||    
T  25885331 atagggggaattcaaagagtcctaaccactgcttacttttctacaa 25885376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 171
Target Start/End: Complemental strand, 28925497 - 28925456
Alignment:
Q  130 ggattgttgatattttcgactaagcaattcaaattacttatt 171  Q
    ||||||||||||||||||||||||||||| |||||| |||||    
T  28925497 ggattgttgatattttcgactaagcaatttaaattatttatt 28925456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 17216808 - 17216739
Alignment:
Q  102 accatcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttatt 171  Q
    |||||||||||||| ||||||||| || ||| ||||||||||||||||||||||||| ||||||||||||    
T  17216808 accatcaagtttttagcgtcgttgccggggaatgttgatattttcgactaagcaatttaaattacttatt 17216739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 11935180 - 11935114
Alignment:
Q  104 catcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttatt 171  Q
    |||||||||||| ||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  11935180 catcaagtttttagcgccgttgtcg-ggattgttgatattttcgactaagcgattcaaattacttatt 11935114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 13128984 - 13129051
Alignment:
Q  104 catcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttatt 171  Q
    |||||||||||| ||| |||||||| ||||||| ||||| || |||||||| ||||||||||||||||    
T  13128984 catcaagtttttagcgccgttgtcggggattgtggatatatttgactaagcgattcaaattacttatt 13129051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 102 - 164
Target Start/End: Complemental strand, 15164758 - 15164696
Alignment:
Q  102 accatcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaatt 164  Q
    |||||||||||||| |||  |||| || ||||||||||||||||||||||||||||| |||||    
T  15164758 accatcaagtttttagcgctgttgccggggattgttgatattttcgactaagcaatttaaatt 15164696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 14649130 - 14649079
Alignment:
Q  13 aatataaatagggggaattcaaagagtcctaaccattgtttccttttctacaa 65  Q
    |||||||| ||||||| ||||||||||||||||| ||||||||||||||||||    
T  14649130 aatataaacaggggga-ttcaaagagtcctaaccgttgtttccttttctacaa 14649079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 298
Target Start/End: Complemental strand, 12318258 - 12318195
Alignment:
Q  236 attattttttattgtcactcctagaactgtgctacttgggtat-ttttgtttatggttgtttca 298  Q
    |||||| |||| ||||||| ||||||| ||||||||||||||| ||||||||||  ||||||||    
T  12318258 attattatttactgtcacttctagaacagtgctacttgggtattttttgtttataattgtttca 12318195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 144
Target Start/End: Complemental strand, 12840703 - 12840662
Alignment:
Q  103 ccatcaagtttttggcgtcgttgtcgaggattgttgatattt 144  Q
    ||||||| ||||||||| |||||||| |||||||||||||||    
T  12840703 ccatcaaatttttggcgccgttgtcggggattgttgatattt 12840662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 325
Target Start/End: Original strand, 13129166 - 13129255
Alignment:
Q  236 attattttttattgtcactcctagaactgtgctacttgggtatttttgtttatggttgtttcagggaatgaatcatggatgattttgcaa 325  Q
    |||||| ||||| |||||||| ||||| | ||| |||| ||||||||||||||| |||||| ||| ||  | |||||||  |||||||||    
T  13129166 attattatttatagtcactcccagaacagggctgcttgagtatttttgtttatgattgtttgaggaaacaattcatggagaattttgcaa 13129255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 7147979 - 7147906
Alignment:
Q  102 accatcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttattcgta 175  Q
    |||||||||||||||||| ||||||   |||||||| |||||||||| ||||||||| ||||||||||||||||    
T  7147979 accatcaagtttttggcgccgttgttagggattgtttatattttcgattaagcaatttaaattacttattcgta 7147906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 270 - 334
Target Start/End: Complemental strand, 7147783 - 7147719
Alignment:
Q  270 cttgggtatttttgtttatggttgtttcagggaatgaatcatggatgattttgcaacagaccagt 334  Q
    ||||||||| ||||||||||||| ||||||| ||  |||||||||| ||||| ||||||||||||    
T  7147783 cttgggtatatttgtttatggttatttcaggaaacaaatcatggattattttacaacagaccagt 7147719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 932730 - 932663
Alignment:
Q  104 catcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttatt 171  Q
    ||||||||| || ||| | |||||| ||||||||||||||||||||| | ||||| ||||||||||||    
T  932730 catcaagttatttgcgccattgtcggggattgttgatattttcgactgaacaatttaaattacttatt 932663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 172
Target Start/End: Complemental strand, 5508327 - 5508257
Alignment:
Q  102 accatcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttattc 172  Q
    |||||||| ||||||||| ||||| |   |||||||||||||||  | |||||||||||||||||||||||    
T  5508327 accatcaaatttttggcgccgttgccagagattgttgatattttgaattaagcaattcaaattacttattc 5508257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 172
Target Start/End: Original strand, 21019700 - 21019774
Alignment:
Q  98 tccaaccatcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttattc 172  Q
    ||||| |||||| |||||| |  ||||| ||| || ||||||||||||||||||| ||||| |||||||||||||    
T  21019700 tccaatcatcaattttttgacaccgttgccgaagaatgttgatattttcgactaaacaatttaaattacttattc 21019774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 188
Target Start/End: Original strand, 12805998 - 12806084
Alignment:
Q  102 accatcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttattcgtatatgtttttattt 188  Q
    |||||||||||||||| | ||||||||  ||||||| |||||||| || ||  | || |||||||||||| |||  |||||||||||    
T  12805998 accatcaagtttttggggccgttgtcggagattgttaatattttctaccaaaaagtttaaattacttatttgtaattgtttttattt 12806084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 169
Target Start/End: Original strand, 8889295 - 8889360
Alignment:
Q  104 catcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattactta 169  Q
    |||||| ||||||||  |||||||| || ||||||||||||||||||   || |||||||||||||    
T  8889295 catcaaatttttggcaccgttgtcggggtttgttgatattttcgactggacagttcaaattactta 8889360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 8713814 - 8713774
Alignment:
Q  103 ccatcaagtttttggcgtcgttgtcgaggattgttgatatt 143  Q
    |||||| |||||||||||| |||||| ||||||||||||||    
T  8713814 ccatcatgtttttggcgtcattgtcggggattgttgatatt 8713774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 9065701 - 9065661
Alignment:
Q  103 ccatcaagtttttggcgtcgttgtcgaggattgttgatatt 143  Q
    |||||| |||||||||||| |||||| ||||||||||||||    
T  9065701 ccatcatgtttttggcgtcattgtcggggattgttgatatt 9065661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 17155857 - 17155793
Alignment:
Q  107 caagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttatt 171  Q
    |||||||||  |||||||| ||   ||||||||||||||| ||||||| |||||||||| |||||    
T  17155857 caagtttttaacgtcgttgccggaaattgttgatattttcaactaagcgattcaaattatttatt 17155793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 315
Target Start/End: Original strand, 19576534 - 19576582
Alignment:
Q  267 ctacttgggtatttttgtttatggttgtttcagggaatgaatcatggat 315  Q
    |||||| ||||||||||||| || ||||||||||||| |||| ||||||    
T  19576534 ctacttaggtatttttgtttgtgattgtttcagggaacgaataatggat 19576582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 205 - 315
Target Start/End: Complemental strand, 18830335 - 18830222
Alignment:
Q  205 gggtatagtaataacaataattatgacaataattattttttatt---gtcactcctagaactgtgctacttgggtatttttgtttatggttgtttcaggg 301  Q
    ||||||||||| || ||||||||| || ||||||||| ||  ||   || ||| |||||| |||||||||||||||||||||||| || |||||||||||    
T  18830335 gggtatagtaagaataataattataactataattattattatttacagttacttctagaattgtgctacttgggtatttttgtttgtgattgtttcaggg 18830236  T
Q  302 aatgaatcatggat 315  Q
    || |||| ||||||    
T  18830235 aacgaataatggat 18830222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 18830457 - 18830390
Alignment:
Q  104 catcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttatt 171  Q
    ||||||||| |||| ||||||||||  |||||||| ||||||||||||| | ||||||||||||||||    
T  18830457 catcaagttcttggagtcgttgtcggagattgttgttattttcgactaaacgattcaaattacttatt 18830390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 13135248 - 13135321
Alignment:
Q  102 accatcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttattcgta 175  Q
    ||||| |||||||||| |||||||||| | ||||||||||||||| || |  ||||| || |||||||||||||    
T  13135248 accattaagtttttggtgtcgttgtcgggaattgttgatattttctacaagacaatttaacttacttattcgta 13135321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 170
Target Start/End: Original strand, 15808101 - 15808183
Alignment:
Q  88 acttgtttattccaaccatcaagtttttggcgtcgttg-tcgaggattgttgatattttcgactaagcaattcaaattacttat 170  Q
    ||||| ||| ||| ||||| || ||||||||||||||| | ||| |||||||||||||||||||||  ||||||||||| ||||    
T  15808101 acttgcttaatccgaccattaaatttttggcgtcgttgcttgag-attgttgatattttcgactaaataattcaaattagttat 15808183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 184
Target Start/End: Original strand, 24308111 - 24308193
Alignment:
Q  102 accatcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttattcgtatatgttttt 184  Q
    ||||||||||||| | || | ||  |||| |||||||||||||||||| |  ||||| ||||||||||||| ||| |||||||    
T  24308111 accatcaagttttggacgcctttaccgagaattgttgatattttcgacaagacaatttaaattacttattcatatttgttttt 24308193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 24976 - 24907
Alignment:
Q  102 accatcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttatt 171  Q
    ||||||| |||||||||| ||||| || |||||||||||||||||||||| |||||| |||||| |||||    
T  24976 accatcatgtttttggcgccgttgccggggattgttgatattttcgactatgcaatttaaattaattatt 24907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 171
Target Start/End: Complemental strand, 39574 - 39506
Alignment:
Q  103 ccatcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttatt 171  Q
    ||||||||||||||| |||| ||  | ||||||||||||||| | ||||||||||||||||||||||||    
T  39574 ccatcaagtttttggtgtcgatgctggggattgttgatatttccaactaagcaattcaaattacttatt 39506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 168162 - 168213
Alignment:
Q  13 aatataaatagggggaattcaaagagtcctaaccattgtttccttttctacaa 65  Q
    |||||||| ||||||| ||||||||||||||||| ||||||||||||||||||    
T  168162 aatataaacaggggga-ttcaaagagtcctaaccgttgtttccttttctacaa 168213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0606 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 172
Target Start/End: Complemental strand, 7866 - 7796
Alignment:
Q  102 accatcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttattc 172  Q
    |||||||||||||||||| ||||| |  | |||||| ||||||||||| | | |||| |||||||||||||    
T  7866 accatcaagtttttggcgccgttgccaggtattgttaatattttcgacaaggtaatttaaattacttattc 7796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 55097 - 55052
Alignment:
Q  13 aatataaatagggggaattcaaagagtcctaaccattgtttcctttt 59  Q
    |||||||||||||||| |||||||||||||||||| ||||| |||||    
T  55097 aatataaataggggga-ttcaaagagtcctaaccagtgttttctttt 55052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 171
Target Start/End: Original strand, 14016 - 14085
Alignment:
Q  102 accatcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttatt 171  Q
    |||||||||||||||  | |  |||||||||||||| ||||| ||||||||| ||||  |||||||||||    
T  14016 accatcaagtttttgttgccactgtcgaggattgtttatattatcgactaagtaattttaattacttatt 14085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 171
Target Start/End: Complemental strand, 76369 - 76304
Alignment:
Q  106 tcaagtttttggcgtcgttgtcgaggattgttgatattttcgactaagcaattcaaattacttatt 171  Q
    |||||||||||||| |||||| | |||||||||||||||| |||| |  ||||  |||||||||||    
T  76369 tcaagtttttggcgccgttgttggggattgttgatatttttgactgaataatttgaattacttatt 76304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0351 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 152 - 184
Alignment:
Q  29 attcaaagagtcctaaccattgtttccttttct 61  Q
    |||||||||||||||||| ||||||||||||||    
T  152 attcaaagagtcctaaccgttgtttccttttct 184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0351; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 5642 - 5678
Alignment:
Q  29 attcaaagagtcctaaccattgtttccttttctacaa 65  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  5642 attcaaagaatcctaaccgttgtttccttttctacaa 5678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 114709 - 114677
Alignment:
Q  29 attcaaagagtcctaaccattgtttccttttct 61  Q
    |||||||||||||||||| ||||||||||||||    
T  114709 attcaaagagtcctaaccgttgtttccttttct 114677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University