View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19235_low_3 (Length: 352)
Name: NF19235_low_3
Description: NF19235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19235_low_3 |
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| [»] scaffold0864 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 152; Significance: 2e-80; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 166 - 333
Target Start/End: Original strand, 5331633 - 5331800
Alignment:
| Q |
166 |
aagagcctctctccaactttgcaccaattgctcctcgtttgaaattttgttcaaaaaactttgaaatgattttccaaactctccggtctgatgacgcact |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||| |
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| T |
5331633 |
aagagcctctctccaactttgcaccaattgctcctcgtttgaaattttgttcaaaaaactttgaaataattttccaaaatctcctgtctgatgacgcact |
5331732 |
T |
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| Q |
266 |
ttagatggttctaaatggtagaacactggcacaacctttagtcctatggttctataagacttcattat |
333 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5331733 |
ttagatggttctaaatggtagaacactggcacaacctttagtcctatggttctataacacttcattat |
5331800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 166 - 333
Target Start/End: Original strand, 5264105 - 5264272
Alignment:
| Q |
166 |
aagagcctctctccaactttgcaccaattgctcctcgtttgaaattttgttcaaaaaactttgaaatgattttccaaactctccggtctgatgacgcact |
265 |
Q |
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||||||||||||||||||||||||||||| || |||| |||||||||||||||||| | ||||||| ||| ||||||||||||| ||||||||||||||| |
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| T |
5264105 |
aagagcctctctccaactttgcaccaattccttctcgattgaaattttgttcaaaagattttgaaaagatattccaaactctcctgtctgatgacgcact |
5264204 |
T |
|
| Q |
266 |
ttagatggttctaaatggtagaacactggcacaacctttagtcctatggttctataagacttcattat |
333 |
Q |
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| T |
5264205 |
tcagatggttctaaatggtagaacaatggcacaaccttttgtcctatggttctataacacttcattat |
5264272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 166 - 318
Target Start/End: Original strand, 5184713 - 5184865
Alignment:
| Q |
166 |
aagagcctctctccaactttgcaccaattgctcctcgtttgaaattttgttcaaaaaactttgaaatgattttccaaactctccggtctgatgacgcact |
265 |
Q |
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||||||||||||||||| | ||||||||| |||||||||| ||||||||||||||| ||||||||| | | |||||||||| || ||||||||||| ||| |
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| T |
5184713 |
aagagcctctctccaacgtagcaccaattcctcctcgtttaaaattttgttcaaaagactttgaaaagctattccaaactcgcctgtctgatgacgtact |
5184812 |
T |
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| Q |
266 |
ttagatggttctaaatggtagaacactggcacaacctttagtcctatggttct |
318 |
Q |
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| ||| || |||| ||||||||||||||| ||||| | ||||||||||||| |
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| T |
5184813 |
tcagaggggtctacatggtagaacactggaacaacaacttgtcctatggttct |
5184865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 319
Target Start/End: Complemental strand, 5393354 - 5393209
Alignment:
| Q |
174 |
ctctccaactttgcaccaattgctcctcgtttgaaattttgttcaaaaaactttgaaatgattttccaaactctccggtctgatgacgcactttagatgg |
273 |
Q |
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||||||||||| || | |||| | ||| ||||||| |||||||||||||||||||||| ||| ||||||||||||| |||||| |||||||| || || |
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| T |
5393354 |
ctctccaacttagctctaattccaccttgtttgaagttttgttcaaaaaactttgaaaagatattccaaactctcctttctgataacgcacttcagtagg |
5393255 |
T |
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| Q |
274 |
ttctaaatggtagaacactggcacaacctttagtcctatggttcta |
319 |
Q |
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||| |||||||||||| || |||||| | ||||||||||||| |
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| T |
5393254 |
ggctacatggtagaacaccggaacaaccacttctcctatggttcta |
5393209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 301
Target Start/End: Complemental strand, 5394591 - 5394456
Alignment:
| Q |
166 |
aagagcctctctccaactttgcaccaattgctcctcgtttgaaattttgttcaaaaaactttgaaatgattttccaaactctccggtctgatgacgcact |
265 |
Q |
| |
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|||||||||| ||||| || || |||||| | |||||||| ||||| ||||||||| ||||| ||| | |||||||||| || |||||| |||||| |
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| T |
5394591 |
aagagcctctttccaatttagcgccaattccacctcgtttaaaattctgttcaaaagactttcaaacgcccttccaaactcacctttctgattgcgcact |
5394492 |
T |
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| Q |
266 |
ttagatggttctaaatggtagaacactggcacaacc |
301 |
Q |
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| ||| || |||| ||||||||||||||| |||||| |
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| T |
5394491 |
tcagagggatctacatggtagaacactggaacaacc |
5394456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 301
Target Start/End: Complemental strand, 5444351 - 5444216
Alignment:
| Q |
166 |
aagagcctctctccaactttgcaccaattgctcctcgtttgaaattttgttcaaaaaactttgaaatgattttccaaactctccggtctgatgacgcact |
265 |
Q |
| |
|
|||||||| | |||||||| ||||||||| ||||| |||| || ||| ||||||| || |||||| | | ||||||||| ||| || ||| ||||||| |
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| T |
5444351 |
aagagcctttttccaacttagcaccaatttctccttttttggaactttcttcaaaagacgttgaaaagctattccaaactttcctctcggattacgcact |
5444252 |
T |
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| Q |
266 |
ttagatggttctaaatggtagaacactggcacaacc |
301 |
Q |
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| ||| || |||| | |||||||||||||||||||| |
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| T |
5444251 |
tcagagggatctacacggtagaacactggcacaacc |
5444216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 5340754 - 5340706
Alignment:
| Q |
213 |
tgttcaaaaaactttgaaatgattttccaaactctccggtctgatgacg |
261 |
Q |
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||||||||| | ||||||||| ||||||||||||||| || |||||||| |
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| T |
5340754 |
tgttcaaaagattttgaaatgcttttccaaactctcctgtttgatgacg |
5340706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0864 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: scaffold0864
Description:
Target: scaffold0864; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 217 - 333
Target Start/End: Complemental strand, 4613 - 4497
Alignment:
| Q |
217 |
caaaaaactttgaaatgattttccaaactctccggtctgatgacgcactttagatggttctaaatggtagaacactggcacaacctttagtcctatggtt |
316 |
Q |
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||||| ||||||||| ||| |||||||||||| |||||||| ||||||| |||||||||||||||||| ||||| |||||||||||| ||||||||||| |
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| T |
4613 |
caaaagactttgaaaagatactccaaactctcctgtctgatggcgcacttcagatggttctaaatggtaaaacacaggcacaaccttttgtcctatggtt |
4514 |
T |
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| Q |
317 |
ctataagacttcattat |
333 |
Q |
| |
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|||||| || ||||||| |
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| T |
4513 |
ctataacacatcattat |
4497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 228 - 333
Target Start/End: Original strand, 22589029 - 22589134
Alignment:
| Q |
228 |
gaaatgattttccaaactctccggtctgatgacgcactttagatggttctaaatggtagaacactggcacaacctttagtcctatggttctataagactt |
327 |
Q |
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|||| ||| ||||||||||||| |||||||| ||||||| |||||||||||||||||||||||| | |||||||||| ||||||||||||| ||| |||| |
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| T |
22589029 |
gaaaagatattccaaactctcctgtctgatggcgcacttcagatggttctaaatggtagaacacagacacaaccttttgtcctatggttctgtaacactt |
22589128 |
T |
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| Q |
328 |
cattat |
333 |
Q |
| |
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|||||| |
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|
| T |
22589129 |
cattat |
22589134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 22922070 - 22922023
Alignment:
| Q |
1 |
atcactctttgtacgataaaagtatgtggaataatatttggtatcttg |
48 |
Q |
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| T |
22922070 |
atcactctttgtacgataaaagtatgtgcaataatatttggtatcttg |
22922023 |
T |
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