View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19236_high_1 (Length: 954)

Name: NF19236_high_1
Description: NF19236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19236_high_1
NF19236_high_1
[»] chr8 (10 HSPs)
chr8 (240-954)||(43339785-43340505)
chr8 (58-234)||(24337825-24338001)
chr8 (56-225)||(41179567-41179736)
chr8 (56-231)||(11254026-11254200)
chr8 (66-208)||(4708328-4708470)
chr8 (65-154)||(18168392-18168481)
chr8 (65-154)||(18631949-18632038)
chr8 (58-154)||(1514803-1514899)
chr8 (59-129)||(32825935-32826005)
chr8 (14-47)||(43340515-43340548)
[»] chr6 (9 HSPs)
chr6 (414-938)||(1014565-1015088)
chr6 (59-233)||(1211840-1212014)
chr6 (58-231)||(5403874-5404047)
chr6 (56-231)||(32644836-32645009)
chr6 (53-112)||(11753162-11753221)
chr6 (58-154)||(34245567-34245663)
chr6 (187-232)||(10503256-10503301)
chr6 (59-151)||(11113557-11113649)
chr6 (162-213)||(26526385-26526436)
[»] chr3 (17 HSPs)
chr3 (52-232)||(37742722-37742899)
chr3 (56-231)||(44380252-44380427)
chr3 (58-204)||(47426350-47426496)
chr3 (59-154)||(50934501-50934596)
chr3 (62-229)||(33509684-33509851)
chr3 (47-124)||(10179868-10179945)
chr3 (58-231)||(47186175-47186349)
chr3 (56-231)||(17466271-17466446)
chr3 (60-126)||(32319468-32319534)
chr3 (56-227)||(35094544-35094717)
chr3 (58-154)||(31187145-31187241)
chr3 (47-124)||(10018671-10018748)
chr3 (58-154)||(42664673-42664769)
chr3 (58-154)||(34029366-34029462)
chr3 (60-210)||(39498689-39498838)
chr3 (47-124)||(10123211-10123288)
chr3 (180-231)||(19619220-19619271)
[»] chr2 (10 HSPs)
chr2 (56-230)||(34392080-34392254)
chr2 (56-231)||(7381690-7381864)
chr2 (72-233)||(23863799-23863958)
chr2 (56-154)||(21603957-21604055)
chr2 (56-231)||(37357915-37358094)
chr2 (53-231)||(4775629-4775808)
chr2 (81-232)||(4779608-4779759)
chr2 (168-235)||(21606149-21606216)
chr2 (162-231)||(25275620-25275689)
chr2 (196-233)||(919446-919483)
[»] chr1 (12 HSPs)
chr1 (58-231)||(2569037-2569209)
chr1 (58-229)||(29119324-29119495)
chr1 (56-227)||(32676134-32676305)
chr1 (58-232)||(46435462-46435624)
chr1 (58-154)||(8809715-8809811)
chr1 (56-151)||(25161307-25161402)
chr1 (56-207)||(8462127-8462277)
chr1 (56-116)||(7214524-7214584)
chr1 (172-231)||(15387156-15387215)
chr1 (195-230)||(36771533-36771568)
chr1 (59-129)||(6223052-6223122)
chr1 (59-116)||(16679812-16679868)
[»] chr4 (16 HSPs)
chr4 (58-231)||(12473704-12473877)
chr4 (58-231)||(12528113-12528286)
chr4 (56-231)||(22343335-22343510)
chr4 (56-225)||(35869575-35869744)
chr4 (59-206)||(33249397-33249544)
chr4 (56-214)||(21260792-21260950)
chr4 (50-231)||(51811906-51812087)
chr4 (59-229)||(52910050-52910219)
chr4 (56-231)||(55590480-55590644)
chr4 (58-154)||(52012778-52012874)
chr4 (162-231)||(1796654-1796723)
chr4 (59-144)||(34829168-34829253)
chr4 (170-232)||(35781021-35781083)
chr4 (59-154)||(49999663-49999758)
chr4 (58-154)||(9799438-9799534)
chr4 (62-113)||(49998486-49998537)
[»] chr5 (15 HSPs)
chr5 (56-230)||(19357261-19357434)
chr5 (56-231)||(11607532-11607707)
chr5 (63-231)||(33858536-33858704)
chr5 (58-232)||(1826259-1826433)
chr5 (74-231)||(33271630-33271787)
chr5 (56-192)||(39570080-39570216)
chr5 (58-231)||(38010611-38010785)
chr5 (58-154)||(29989962-29990058)
chr5 (56-154)||(9827786-9827884)
chr5 (58-154)||(13015381-13015477)
chr5 (118-207)||(42148206-42148295)
chr5 (58-129)||(13086753-13086824)
chr5 (59-154)||(13421085-13421180)
chr5 (58-154)||(13478120-13478216)
chr5 (162-225)||(10292976-10293039)
[»] scaffold0229 (1 HSPs)
scaffold0229 (59-231)||(13003-13176)
[»] chr7 (7 HSPs)
chr7 (56-231)||(35341534-35341709)
chr7 (58-231)||(48250154-48250329)
chr7 (82-231)||(32694568-32694717)
chr7 (56-231)||(48072387-48072560)
chr7 (58-154)||(40893116-40893213)
chr7 (62-151)||(31306951-31307041)
chr7 (162-213)||(40856949-40857000)
[»] scaffold0519 (1 HSPs)
scaffold0519 (56-231)||(11193-11367)
[»] scaffold0032 (1 HSPs)
scaffold0032 (56-231)||(34192-34365)
[»] scaffold0041 (1 HSPs)
scaffold0041 (58-154)||(73071-73168)
[»] scaffold0263 (2 HSPs)
scaffold0263 (59-116)||(23094-23151)
scaffold0263 (88-154)||(23174-23240)


Alignment Details
Target: chr8 (Bit Score: 632; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 240 - 954
Target Start/End: Complemental strand, 43340505 - 43339785
Alignment:
Q  240 gcaagcttgacagatacataattaatataaatcacaaaggtccaatataaatacaagaccacccctagctgcataacatgatcaactcctgcagctccac 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  43340505 gcaagcttgacagatacataattaatataaatcacaaaggtccaatataaatacaagaccacccctaactgcataacatgatcaactcctgcagctccac 43340406  T
Q  340 gcctccacccaatgaagaaaaaggaaaccatactaatgtaatcaaagaaccagccttacaagcaaacactgatcatatgagcacataaaccgccccacaa 439  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  43340405 gcctccacccaatgaagaaaacggaaaccatactaatgtaatcaaagaaccagccttaaaagcaaacactgatcatatgagcacataaaccgccccacaa 43340306  T
Q  440 cacttcagttcagctccctgcgaacactacatacgcacaagaactgatatgagcaaaacagaaccagccactaccaacatcaaaagcagtcgacgatcat 539  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43340305 cacttcagttcagctccctgcgaacactacatacgcacaagaactgatatgagcaaaacagaaccagccactaccaacatcaaaagcagtcgacgatcat 43340206  T
Q  540 ataccacggatacaaacaagtggattcaaccaccaatcggaccatcgaaagtttgtgttcaatccct----ccctacacataaaccaagaccaagatagg 635  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||    
T  43340205 ataccacggatacaaacaagtggattcaaccaccaatcggaccatcgaaagtttgtgttcaatccctccctccctacacataaaccaagaccaagatagg 43340106  T
Q  636 cttctgatatggtcaaccacctctaaataatttgcaaccttcctgttaaaaataacattatttcgctccaaccacatgcaccaagccgttgttaaccaca 735  Q
    ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43340105 ctcttgatatggtcaaccacctctaaataatttgcaaccttcctgttaaaaataacattatttcgctccaaccacatgcaccaagccgttgttaaccaca 43340006  T
Q  736 ataaatgcgatacnnnnnnnacttttcttacctttgcaaattggattgaattaatgaaagttgtttactacatcaccatctcaaaccttcagcccccact 835  Q
     ||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  43340005 ctaaatgcgatactttttttacttttcttacctttgcaaattggattgaattaatgaaagttgtttactacatcaccatcccaaaccttcagcccccact 43339906  T
Q  836 cccaaccaattaaaaatcaagctctacgcttccaacatctctgagcaaattgcaaacaaatggctagatgtttcaatttctctaaagcag--cacacaca 933  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  43339905 cccaaccaattaaaaatcaagctccacgcttccaacgtctctgagcaagttgcaaacaaatggctagatgtttcaatttctctaaagcagcacacacaca 43339806  T
Q  934 acattgtcggtgaacatctct 954  Q
    |||||||||||||||||||||    
T  43339805 acattgtcggtgaacatctct 43339785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 58 - 234
Target Start/End: Complemental strand, 24338001 - 24337825
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatatannn 157  Q
    |||||||||||| ||||||||| |||||||||||||||| || ||||||||||||| |||||||||||||||| |||   |||||||||||||||||       
T  24338001 ccacttgtgtactattaaggtagcaatggtatataccatcggtcaattagagtgtgccatctaccaatgttactttatagatgctttatttgatatatat 24337902  T
Q  158 nnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcccac 234  Q
        |||||||||||||| | ||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||    
T  24337901 ttttaaagggtgtgccacatagcacattctaattggacaatggtatataccattatggtacacaagtgctatcccac 24337825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 56 - 225
Target Start/End: Complemental strand, 41179736 - 41179567
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatatan 155  Q
    |||||||||||||||||||||||| ||||| |||||| ||||||||||||| ||||||||| ||||| ||||||| |||  |||| ||||||| |||||     
T  41179736 ttccacttgtgtaccattaaggtaccaatgatatatatcattggccaattaaagtgtgtcacctaccgatgttactttataaatgttttatttaatatat 41179637  T
Q  156 nnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtg 225  Q
          || || |||||||| ||||||||| ||||||  |||||||||||||||||||| ||||||||||    
T  41179636 ttttttaatggatgtgccacatggcacattctaattgggcaatggtatataccattatggtacacaagtg 41179567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 56 - 231
Target Start/End: Complemental strand, 11254200 - 11254026
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatatan 155  Q
    ||||||||||||||||||||  || ||||| |||||| ||||| ||| ||| ||| |  || ||||||||||||| |||  |||| |||||||||||||     
T  11254200 ttccacttgtgtaccattaaattaccaatgatatatatcattgacca-ttatagtataccacctaccaatgttactttataaatgttttatttgatatac 11254102  T
Q  156 nnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
          ||||||||||||||||| |||||| ||| ||| |||||||||||||||||||| ||||||| ||||||||    
T  11254101 atttttaaagggtgtgccacgtgacacattctaactgagcaatggtatataccattatggtacacaaatgctatcc 11254026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 66 - 208
Target Start/End: Complemental strand, 4708470 - 4708328
Alignment:
Q  66 gtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatatannnnnnnaaag 165  Q
    |||||| ||||||| |||||| ||||| |||  |||||||| ||||||||| ||||||||||||| |||  |||| |||||||||||||       ||||    
T  4708470 gtaccactaaggtaccaatggcatatatcatgcgccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatatatttttaaag 4708371  T
Q  166 ggtgtgccacgtggcacattataattgaacaatggtatatacc 208  Q
    |||||||||||||||||||| |||||   ||||||||| ||||    
T  4708370 ggtgtgccacgtggcacattctaattaggcaatggtatttacc 4708328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 154
Target Start/End: Original strand, 18168392 - 18168481
Alignment:
Q  65 tgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatata 154  Q
    ||||||||||||||| |||||||||||| |||||  ||||||||||||  || |||||||| |||| |||  ||| ||||||||||||||    
T  18168392 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttactttataaatactttatttgatata 18168481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 154
Target Start/End: Original strand, 18631949 - 18632038
Alignment:
Q  65 tgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatata 154  Q
    ||||||||||||||| |||||||||||| |||||  ||||||||||||  || |||||||| |||| |||  ||| ||||||||||||||    
T  18631949 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttactttataaatactttatttgatata 18632038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 154
Target Start/End: Original strand, 1514803 - 1514899
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatata 154  Q
    |||||||||||||||||||||| ||||| |||||| |||||  |||| |||||||  ||  |||||||||||| |||  |||| |||||||||||||    
T  1514803 ccacttgtgtaccattaaggtaccaatgttatataacattgatcaataagagtgtaccacataccaatgttactttataaatgttttatttgatata 1514899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 129
Target Start/End: Complemental strand, 32826005 - 32825935
Alignment:
Q  59 cacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgtta 129  Q
    ||||||||||||||||| ||| ||||| | |||||||||||||||||||||| |||||  || ||||||||    
T  32826005 cacttgtgtaccattaaagtatcaatgttgtataccattggccaattagagtatgtcacatatcaatgtta 32825935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 43340548 - 43340515
Alignment:
Q  14 catcaaacaaacagcatacaacttgtctccacat 47  Q
    ||||||||||||||||||||||||||||||||||    
T  43340548 catcaaacaaacagcatacaacttgtctccacat 43340515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 188; Significance: 1e-101; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 414 - 938
Target Start/End: Original strand, 1014565 - 1015088
Alignment:
Q  414 atatgagcacataaaccgccccacaacacttcagttcagctccctgcgaacactacatacgcacaagaactgatatgagcaaaacagaaccagccactac 513  Q
    ||||||||||| || | |||||||||| ||||||||||||||||||| ||||| | |  ||||||  |||||||| ||| |||| ||||  |||||||||    
T  1014565 atatgagcacagaaccagccccacaacccttcagttcagctccctgcaaacaccagacccgcacagaaactgatacgagtaaaatagaaagagccactac 1014664  T
Q  514 caacatcaaaagcagtcgacgatcatataccacggatacaaacaagtggattcaaccaccaatcggaccatcgaaagtttgtgttcaatccctccctaca 613  Q
     |||||   ||| || ||||| ||| ||||  | ||||||||||||||||||||||||||||| ||| ||||||||||| ||||| || |||||||||||    
T  1014665 aaacattgcaagaaggcgacgttcaaatacttcagatacaaacaagtggattcaaccaccaataggatcatcgaaagttcgtgttgaacccctccctaca 1014764  T
Q  614 cataaaccaagaccaagataggcttctgatatggtcaaccacctctaaataatttgcaaccttcctgttaaaaataacattatttcgctccaaccacatg 713  Q
    ||||||||||||||||||||||  | ||||| | ||||||||||||||| ||||  |||||| ||  ||||||| ||||||||  ||||||||||| ||     
T  1014765 cataaaccaagaccaagataggtgtttgataggatcaaccacctctaaacaattcacaacctaccatttaaaaagaacattataacgctccaaccaaata 1014864  T
Q  714 caccaagccgttgttaaccacaataaatgcgatacnnnnnnnacttttcttacctttgcaaattggattgaattaatgaaagttgtttactacatcacca 813  Q
    |||||||| ||||||| ||||| ||||||||||||       || ||||||||| | |||||||| ||||||| || | ||||||||| |||||| || |    
T  1014865 caccaagctgttgttagccacactaaatgcgatactttttttacctttcttaccctcgcaaattgaattgaataaaaggaagttgtttgctacataacaa 1014964  T
Q  814 tctcaaaccttcagcccccactcccaaccaattaaaaatcaagctctacgcttccaacatctctgagcaaattgcaaacaaatggctagatgtttcaatt 913  Q
    || | ||||||||||| |||||||||| |||||| ||||||||||| |  | ||| || ||| |||||||  |||||||||| ||| |||||||||||||    
T  1014965 tc-ccaaccttcagcctccactcccaatcaattacaaatcaagctccatacatccgacgtctttgagcaagatgcaaacaaagggccagatgtttcaatt 1015063  T
Q  914 tctctaaagcagcacacacaacatt 938  Q
    ||||||||||| |||||||||||||    
T  1015064 tctctaaagcaccacacacaacatt 1015088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 59 - 233
Target Start/End: Complemental strand, 1212014 - 1211840
Alignment:
Q  59 cacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatatannnn 158  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||| ||||| || ||  ||||||||| ||| | |||||||||||||||||        
T  1212014 cacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcgatgctttatttgatatatttt 1211915  T
Q  159 nnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatccca 233  Q
       |||||||||||||||||||||||| |||| |  |||||||||||||||||||| |||||||||| |||||||    
T  1211914 tttaaagggtgtgccacgtggcacattctaatggggcaatggtatataccattatggtacacaagtgatatccca 1211840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 58 - 231
Target Start/End: Complemental strand, 5404047 - 5403874
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatatannn 157  Q
    ||||||||||||||||||||||  |||||||||||  ||||| || ||||||| || || ||||||||||||| |||   ||| |||||||||||||       
T  5404047 ccacttgtgtaccattaaggtactaatggtatatattattggtcagttagagtctgccacctaccaatgttactttatagatgttttatttgatatattt 5403948  T
Q  158 nnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
        |||||| ||  ||| || |||||| |||||| ||||||||||||||||||||| ||||||||||||||||    
T  5403947 ttttaaagggcgtatcacatgacacattctaattggacaatggtatataccattatggtacacaagtgctatcc 5403874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 56 - 231
Target Start/End: Complemental strand, 32645009 - 32644836
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatatan 155  Q
    |||||| |||||||||||||| || | || ||||||| |||||||||||||  |||||||| |||| |||||||| |||  ||| ||||||||| ||||     
T  32645009 ttccacctgtgtaccattaagatatcgatagtatatatcattggccaattaaggtgtgtcacctacaaatgttacttta-aaatactttatttgttatat 32644911  T
Q  156 nnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
          |||||||||||||| ||  ||| | |||||||||||||||||||||||||||| ||||||||||||||||    
T  32644910 ttttttaaagggtgtgccacatgatacaatctaattgaacaatggtatataccattatg-tacacaagtgctatcc 32644836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 11753162 - 11753221
Alignment:
Q  53 gggttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgt 112  Q
    |||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  11753162 gggtaccacttgtgtaccattaaggtaccaatggtatataccatcggccaattagagtgt 11753221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 154
Target Start/End: Original strand, 34245567 - 34245663
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatata 154  Q
    ||||||||||||||||||||||  |||| |||||| ||||| ||||| | |||||| ||  |||||||||||| |||  ||| ||||||||||||||    
T  34245567 ccacttgtgtaccattaaggtattaatgttatataacattgaccaataaaagtgtgccacgtaccaatgttactttataaatactttatttgatata 34245663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 10503301 - 10503256
Alignment:
Q  187 taattgaacaatggtatataccattatgttacacaagtgctatccc 232  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||    
T  10503301 taattggacaatggtatataccattatggtacacaagtgctatccc 10503256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 151
Target Start/End: Original strand, 11113557 - 11113649
Alignment:
Q  59 cacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgat 151  Q
    ||||||||||||||||||||| ||||| |||||| ||||| | ||| |||||||||||  ||| |||||||| ||   | |||||||||||||    
T  11113557 cacttgtgtaccattaaggtaccaatgctatataacattgactaataagagtgtgtcacatactaatgttactttgtaagtgctttatttgat 11113649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 26526436 - 26526385
Alignment:
Q  162 aaagggtgtgccacgtggcacattataattgaacaatggtatataccattat 213  Q
    |||||||||| |||||| |||||| |||||||||||| ||| ||||||||||    
T  26526436 aaagggtgtgtcacgtgacacattctaattgaacaatagtagataccattat 26526385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 6e-55; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 52 - 232
Target Start/End: Original strand, 37742722 - 37742899
Alignment:
Q  52 cgggttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgat 151  Q
    |||||||||||||||||   |||||||| |||||||||||| |||||| |||||||||| || || ||||||||||||||||||||||||||||||||||    
T  37742722 cgggttccacttgtgta---ttaaggtaccaatggtatatatcattggtcaattagagtatgccacctaccaatgttacattaccaatgctttatttgat 37742818  T
Q  152 atannnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatccc 232  Q
    |||       |||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  37742819 atatttttttaaagagtgtgccacgtggcacattataattgggcaatggtatataccattatgttacacaagtgctatccc 37742899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 56 - 231
Target Start/End: Original strand, 44380252 - 44380427
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatatan 155  Q
    |||||||||||||||||||||||| ||||||||||||| |||| ||||||| ||||||||| ||| |||| |||| |||  ||||||||||||||||||     
T  44380252 ttccacttgtgtaccattaaggtaccaatggtatatactattgaccaattatagtgtgtcacctatcaatattactttataaatgctttatttgatatac 44380351  T
Q  156 nnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
          ||||||||||||||||| |||||| |||||| ||||||||||||||||||||| |||||||||| |||||    
T  44380352 ttttttaaagggtgtgccacgtgacacattctaattggacaatggtatataccattatggtacacaagtgttatcc 44380427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 58 - 204
Target Start/End: Original strand, 47426350 - 47426496
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatatannn 157  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||| ||||||||| |||   |||||||||||||||||       
T  47426350 ccacttgtgtaccattaaggtaccaatagtatataccattggccaattagagtgtgtcacctatcaatgttactttatagatgctttatttgatatattt 47426449  T
Q  158 nnnnaaagggtgtgccacgtggcacattataattgaacaatggtata 204  Q
        |||||||||||||| ||| ||||| ||||||  ||||||||||    
T  47426450 ttttaaagggtgtgccacatggtacattctaattgggcaatggtata 47426496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 59 - 154
Target Start/End: Original strand, 50934501 - 50934596
Alignment:
Q  59 cacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatata 154  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||  |||||||||||| |||  ||||| ||||||||||||    
T  50934501 cacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacttaccaatgttactttataaatgcattatttgatata 50934596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 62 - 229
Target Start/End: Original strand, 33509684 - 33509851
Alignment:
Q  62 ttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatatannnnnnn 161  Q
    ||||||||||||||||||  ||| ||||||| ||||| |||||||||||||| || |||||||| |||| |||   |||||||||||||| ||           
T  33509684 ttgtgtaccattaaggtactaatagtatatatcattgaccaattagagtgtgccacctaccaatattactttatagatgctttatttgatgtattttttt 33509783  T
Q  162 aaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctat 229  Q
    ||||| |||||||| ||||||||| |||||  |||||| |||||||||||||  ||||||||||||||    
T  33509784 aaaggatgtgccacatggcacattctaattagacaatgatatataccattattgtacacaagtgctat 33509851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 47 - 124
Target Start/End: Complemental strand, 10179945 - 10179868
Alignment:
Q  47 tattgcgggttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaa 124  Q
    |||||||| |||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||| || |||||||    
T  10179945 tattgcggattccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgccacctaccaa 10179868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 58 - 231
Target Start/End: Original strand, 47186175 - 47186349
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatata-nn 156  Q
    |||||||||||||||||||||| ||||| |||||| ||||||||||| |||||||| ||  |||||||||||| |||  ||| ||||||||||||||       
T  47186175 ccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgt 47186274  T
Q  157 nnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
         |||| ||||||||| |||||||   ||||||   |||| |||||| ||| ||| ||||||||||||||||    
T  47186275 tttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatcc 47186349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 56 - 231
Target Start/End: Original strand, 17466271 - 17466446
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatatan 155  Q
    ||||| |||||||| ||| |  || |||||||||||| |||||| |||||||||||||||| ||| ||||||||| |||  |||| |||| ||||||||     
T  17466271 ttccatttgtgtacgattcaaatatcaatggtatatatcattggtcaattagagtgtgtcacctatcaatgttactttataaatgatttagttgatatat 17466370  T
Q  156 nnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
          ||||||| ||||||||  |||| | ||| ||| |||||||||||||||||| | ||||||| || |||||    
T  17466371 ttttttaaagggtatgccacgtaccacaatctaactgagcaatggtatataccattacggtacacaaatgttatcc 17466446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 60 - 126
Target Start/End: Complemental strand, 32319534 - 32319468
Alignment:
Q  60 acttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatg 126  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||| ||||    
T  32319534 acttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctacaaatg 32319468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 56 - 227
Target Start/End: Original strand, 35094544 - 35094717
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaatta--gagtgtgtcatctaccaatgttacattaccaatgctttatttgatat 153  Q
    ||||||||  |||||||||| ||| || ||||||||||||||| | |||||  |||| || || ||||||||||||| |||  |||  ||||||||||||    
T  35094544 ttccacttcagtaccattaaagtaccagtggtatataccattgactaattatagagtatgccacctaccaatgttactttataaatattttatttgatat 35094643  T
Q  154 annnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgct 227  Q
    |       ||||| |||| |||||| |||||| |||||| |||||| || ||||||||||| ||||||| ||||    
T  35094644 atttttttaaaggatgtgtcacgtgacacattctaattggacaatgatacataccattatggtacacaaatgct 35094717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 58 - 154
Target Start/End: Complemental strand, 31187241 - 31187145
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatata 154  Q
    |||||| ||||||||||||||| ||||| |||||| ||||| ||||| |||||||| ||  |||||||||||| |||  |||| |||||||||||||    
T  31187241 ccacttatgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatgttttatttgatata 31187145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 124
Target Start/End: Complemental strand, 10018748 - 10018671
Alignment:
Q  47 tattgcgggttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaa 124  Q
    |||||||| |||||||||||||||||||| ||| ||||| ||||||||||||| |||| | |||||| || |||||||    
T  10018748 tattgcggattccacttgtgtaccattaaagtaccaatgttatataccattggtcaataaaagtgtgccacctaccaa 10018671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 154
Target Start/End: Original strand, 42664673 - 42664769
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatata 154  Q
    |||||||||||||||||||||| ||| | |||||| ||||| ||||| |||||||| ||  |||||||||||  |||  |||| |||||||||||||    
T  42664673 ccacttgtgtaccattaaggtaccaaagttatataacattgaccaataagagtgtgccacataccaatgttattttataaatgttttatttgatata 42664769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 154
Target Start/End: Complemental strand, 34029462 - 34029366
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatata 154  Q
    |||||||| ||||||||||||| ||||| |||||| |||||  |||| |||||||| ||  ||| |||||||| |||  |||| |||||||||||||    
T  34029462 ccacttgtttaccattaaggtaccaatgttatataacattgatcaataagagtgtgccacatactaatgttactttataaatgttttatttgatata 34029366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 210
Target Start/End: Complemental strand, 39498838 - 39498689
Alignment:
Q  60 acttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatatannnnn 159  Q
    |||||||||||||||| ||| ||||| ||||||  ||||| |||||| ||||||||| ||| | ||||||  |||  |||  ||||||| |||||         
T  39498838 acttgtgtaccattaaagtaccaatgatatatattattggtcaattaaagtgtgtcacctatcgatgttattttataaatattttatttaatata-attt 39498740  T
Q  160 nnaaagggtgtgccacgtggcacattataattgaacaatggtatataccat 210  Q
      ||||| ||||||||||| |||||| ||||||| |||| |||||||||||    
T  39498739 ttaaaggatgtgccacgtgacacattctaattgagcaatagtatataccat 39498689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 124
Target Start/End: Complemental strand, 10123288 - 10123211
Alignment:
Q  47 tattgcgggttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaa 124  Q
    |||||||| |||||||||||||||||||| ||| ||||| |||||| || ||| |||| | |||||| || |||||||    
T  10123288 tattgcggattccacttgtgtaccattaaagtatcaatgttatatatcaatggtcaataaaagtgtgccacctaccaa 10123211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 19619220 - 19619271
Alignment:
Q  180 cacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
    |||||| ||||||  |||||||||||||||||||| |||||| |||||||||    
T  19619220 cacattttaattgggcaatggtatataccattatggtacacatgtgctatcc 19619271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 4e-50; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 56 - 230
Target Start/End: Complemental strand, 34392254 - 34392080
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatatan 155  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| || |||||||| |||| |||  ||||||||||||||||||     
T  34392254 ttccacttgtgtaccattgaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatcttactttataaatgctttatttgatatat 34392155  T
Q  156 nnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatc 230  Q
          |||||||||||||| ||||||| | |||||| ||||||||||||||||||||| |||||||||||||||    
T  34392154 ttttttaaagggtgtgccacatggcacaatctaattggacaatggtatataccattatggtacacaagtgctatc 34392080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 56 - 231
Target Start/End: Original strand, 7381690 - 7381864
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatatan 155  Q
    |||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||| |||  ||| ||||||||||||||     
T  7381690 ttccgcttgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccatctaccaatgttactttataaattctttatttgatata- 7381788  T
Q  156 nnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
          ||||| |||| || ||| |||||| ||||||  |||| ||||||||||||||  ||| ||||| ||||||    
T  7381789 ttttttaaaggatgtgtcatgtgacacattttaattgggcaatagtatataccattatagtacgcaagttctatcc 7381864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 72 - 233
Target Start/End: Complemental strand, 23863958 - 23863799
Alignment:
Q  72 ttaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatatannnnnnnaaagggtgtg 171  Q
    |||||||| |||||||||||   ||||| ||||||||||||| || ||||||||||||| |||  ||||||||||||||||||       ||||||||||    
T  23863958 ttaaggtaccaatggtatatt--attggtcaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatatatttttaaagggtgtg 23863861  T
Q  172 ccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatccca 233  Q
    |||| ||||||||| |||||| |||||| |||||| ||||||| ||||| ||||||||||||    
T  23863860 ccacatggcacattctaattggacaatgatatatatcattatggtacactagtgctatccca 23863799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 21603957 - 21604055
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatata 154  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||| ||| ||||||||||||| |||  |||| |||||||||||||    
T  21603957 ttccacttgtgtaccattaaggtaccaatggtatataccattgaccaattatagtgtatcacctaccaatgttactttataaatgttttatttgatata 21604055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 56 - 231
Target Start/End: Complemental strand, 37358094 - 37357915
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgata--- 152  Q
    ||||||||||||| |||||||||| ||||| |||||||||||| | ||||||||||||||| ||| ||||||||| |||  |||||||||||| |||       
T  37358094 ttccacttgtgtatcattaaggtaccaatgatatataccattgactaattagagtgtgtcacctatcaatgttactttataaatgctttatttaatattt 37357995  T
Q  153 -tannnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
     |        |||   ||||||||||| |||||| |||||| |||||||||||||| |||||| ||||||||||||||||    
T  37357994 ttttttttttaaactatgtgccacgtgacacattctaattggacaatggtatatactattatgatacacaagtgctatcc 37357915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 53 - 231
Target Start/End: Original strand, 4775629 - 4775808
Alignment:
Q  53 gggttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaa-tgctttatttgat 151  Q
    |||| |||||| |||||||||||| || ||||| ||||||  |||||||||||||| ||| |||||||||||| |||| |||  || || ||||||| ||    
T  4775629 gggtaccacttatgtaccattaagctaccaatgatatatattattggccaattagaatgtctcatctaccaatcttactttattaattgttttatttaat 4775728  T
Q  152 atannnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
    |||       ||||| |||||||| ||||||| | |||||| ||||||||||||||||||||| ||||||| || |||||    
T  4775729 atatttttttaaaggatgtgccacatggcacaatttaattggacaatggtatataccattatggtacacaaatgttatcc 4775808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 81 - 232
Target Start/End: Original strand, 4779608 - 4779759
Alignment:
Q  81 caatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatatannnnnnnaaagggtgtgccacgtggc 180  Q
    |||| |||||||||||||  || ||| |||||| |  ||| ||||||||| |||  ||| ||||||||||||||       ||||| |||| |||||| |    
T  4779608 caatagtatataccattgatcacttatagtgtgccgcctaacaatgttactttataaatactttatttgatatatttttttaaaggatgtgtcacgtgac 4779707  T
Q  181 acattataattgaacaatggtatataccattatgttacacaagtgctatccc 232  Q
    ||||| |||||| ||||||||||||||||||||| |||||||||| ||||||    
T  4779708 acattctaattggacaatggtatataccattatgatacacaagtgttatccc 4779759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 168 - 235
Target Start/End: Original strand, 21606149 - 21606216
Alignment:
Q  168 tgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcccacg 235  Q
    ||||||||||| |||||| |||||| ||||||||||||||||||||| |||| |||||||||||||||    
T  21606149 tgtgccacgtgacacattctaattggacaatggtatataccattatgatacagaagtgctatcccacg 21606216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 162 - 231
Target Start/End: Complemental strand, 25275689 - 25275620
Alignment:
Q  162 aaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
    ||||| |||||||||||  ||||| |||||| |||||| |||||||||||||| |||| |||||||||||    
T  25275689 aaaggatgtgccacgtgatacattctaattggacaatgatatataccattatgatacagaagtgctatcc 25275620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 233
Target Start/End: Complemental strand, 919483 - 919446
Alignment:
Q  196 aatggtatataccattatgttacacaagtgctatccca 233  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  919483 aatggtataaaccattatggtacacaagtgctatccca 919446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 6e-49; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 58 - 231
Target Start/End: Original strand, 2569037 - 2569209
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatatannn 157  Q
    |||||||||||||||||||||| |||||||||||| |||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||       
T  2569037 ccacttgtgtaccattaaggtaccaatggtatatatcatttgccaattagagtgtgccacctaccaatgttacattaccaatgctttatttgatata-tt 2569135  T
Q  158 nnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
        ||||||||||||| |||||||||| |||||   |||| ||||||| ||||||||||||||||||||||||    
T  2569136 ttttaaagggtgtgccatgtggcacattctaattaggcaatagtatatatcattatgttacacaagtgctatcc 2569209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 58 - 229
Target Start/End: Complemental strand, 29119495 - 29119324
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatatannn 157  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||| || |||||| |||   |||||||||||||||||       
T  29119495 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctatcattgttactttatagatgctttatttgatatattt 29119396  T
Q  158 nnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctat 229  Q
        |||||||||||||| ||||||||| ||||||  |||| ||||||||| ||||| ||||||| ||||||    
T  29119395 ttttaaagggtgtgccacatggcacattctaattgggcaattgtatatacccttatggtacacaaatgctat 29119324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 56 - 227
Target Start/End: Original strand, 32676134 - 32676305
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatatan 155  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||   || ||||||||||||| |||  ||||||||||||||||||     
T  32676134 ttccacttgtgtaccattaaggtaccaatggtatataccattggccaattagaatgcaccacctaccaatgttactttataaatgctttatttgatatat 32676233  T
Q  156 nnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgct 227  Q
          ||||  |||||||| ||||||| | |||||| ||||||||||||||||||||  ||||||| ||||    
T  32676234 ttttttaaagcatgtgccacatggcacaatctaattggacaatggtatataccattatagtacacaaatgct 32676305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 58 - 232
Target Start/End: Complemental strand, 46435624 - 46435462
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatatannn 157  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||| ||            |||   |||||||||||||||||       
T  46435624 ccacttgtgtaccattaaggtaccaatggtatatacaattggccaattagagtgcgtcacct------------ttatagatgctttatttgatatatat 46435537  T
Q  158 nnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatccc 232  Q
        |||||||||| ||| || |||||| ||||||  |||||||||||||||||||| ||||||||| |||||||    
T  46435536 ttttaaagggtgtgtcacatgacacattctaattgggcaatggtatataccattatggtacacaagtcctatccc 46435462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 58 - 154
Target Start/End: Complemental strand, 8809811 - 8809715
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatata 154  Q
    |||||||||||||||||||||| ||||| |||||| ||||| ||||| |||||||| ||  |||||||||||| |||  |||| |||||||||||||    
T  8809811 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacgtaccaatgttactttataaatgttttatttgatata 8809715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 56 - 151
Target Start/End: Original strand, 25161307 - 25161402
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgat 151  Q
    |||||||||||||||||||| ||  |||||||||||||||||| ||||||| |||||| || ||| ||||||||| |||  |||| ||||||||||    
T  25161307 ttccacttgtgtaccattaaagtctcaatggtatataccattgaccaattacagtgtgccacctaacaatgttactttataaatgttttatttgat 25161402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 56 - 207
Target Start/End: Original strand, 8462127 - 8462277
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatatan 155  Q
    |||||||||||||  ||||| ||| |||||||||||| |||||  |||||| |||||| || ||||||||||||  |||  |||| ||||||| |||||     
T  8462127 ttccacttgtgtat-attaaagtaccaatggtatatatcattgatcaattatagtgtgccacctaccaatgttattttataaatgttttatttaatatac 8462225  T
Q  156 nnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatatac 207  Q
          |||||| |||||||||| |||||| |||||| ||||||||||||||    
T  8462226 ttttttaaagggcgtgccacgtgacacattttaattggacaatggtatatac 8462277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 7214584 - 7214524
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtca 116  Q
    ||||| ||||||||||||||||||  ||| |||||||  ||||| ||||||||||||||||    
T  7214584 ttccatttgtgtaccattaaggtactaatagtatatattattggtcaattagagtgtgtca 7214524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 15387215 - 15387156
Alignment:
Q  172 ccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
    ||||||| |||||| ||||||||||||  |||||||||||||| |||| ||||| |||||    
T  15387215 ccacgtgacacattttaattgaacaatattatataccattatggtacataagtgttatcc 15387156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 230
Target Start/End: Original strand, 36771533 - 36771568
Alignment:
Q  195 caatggtatataccattatgttacacaagtgctatc 230  Q
    ||||||||||||||||||| ||||||||||||||||    
T  36771533 caatggtatataccattatattacacaagtgctatc 36771568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 129
Target Start/End: Original strand, 6223052 - 6223122
Alignment:
Q  59 cacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgtta 129  Q
    ||||||||||||||||| ||| ||||| |||||| |||||  ||||||  ||||||||| || ||||||||    
T  6223052 cacttgtgtaccattaaagtatcaatgttatatatcattgatcaattaaggtgtgtcatatatcaatgtta 6223122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 16679868 - 16679812
Alignment:
Q  59 cacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtca 116  Q
    ||||||||||||||||||||| ||||| ||||||| ||| |||||||||  |||||||    
T  16679868 cacttgtgtaccattaaggtaccaatgttatatactatt-gccaattaggatgtgtca 16679812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 4e-47; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 58 - 231
Target Start/End: Original strand, 12473704 - 12473877
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatatannn 157  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||| |||   |||||||||||||||||       
T  12473704 ccacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatattt 12473803  T
Q  158 nnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
        |||||||||| ||| || |||||| ||||||| |||||||||||||||||||| ||||||||||||||||    
T  12473804 ttttaaagggtgtggcacatgacacattctaattgagcaatggtatataccattatggtacacaagtgctatcc 12473877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 58 - 231
Target Start/End: Original strand, 12528113 - 12528286
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatatannn 157  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||| |||   |||||||||||||||||       
T  12528113 ccacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatattt 12528212  T
Q  158 nnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
        |||||||||| ||| || |||||| ||||||| |||||||||||||||||||| ||||||||||||||||    
T  12528213 ttttaaagggtgtggcacatgacacattctaattgagcaatggtatataccattatggtacacaagtgctatcc 12528286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 56 - 231
Target Start/End: Original strand, 22343335 - 22343510
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatatan 155  Q
    |||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||| ||||||||| |||  ||||||||||||||||||     
T  22343335 ttccacttgtgtaccattaaggtatcaatggtatatatcattgaccaattagagtgtgtcatctatcaatgttactttataaatgctttatttgatatat 22343434  T
Q  156 nnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
          ||||| |||||||| || |||||| ||||||||||||| |||||||||||||| |||||| ||| |||||    
T  22343435 tattttaaaggatgtgccacatgacacattctaattgaacaatgatatataccattatggtacacaggtgatatcc 22343510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 56 - 225
Target Start/End: Complemental strand, 35869744 - 35869575
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatatan 155  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||| | |||| || |||||||||||||  ||  |||| |||||||||||||     
T  35869744 ttccacttgtgtaccattaaggtaccaatggtatataccattgaccaattataatgtgccacctaccaatgttactatataaatgttttatttgatatac 35869645  T
Q  156 nnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtg 225  Q
          ||||||||||||||||| |||||| |||||||||||||||||||||||||||| || |||||||    
T  35869644 ttttttaaagggtgtgccacgtgacacattctaattgaacaatggtatataccattatggtagacaagtg 35869575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 59 - 206
Target Start/End: Complemental strand, 33249544 - 33249397
Alignment:
Q  59 cacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatatannnn 158  Q
    |||||||||||||||||||||  |||||||||||| |||||||||||||||||||||| ||||||||||||| |||  ||||||||||||||||||        
T  33249544 cacttgtgtaccattaaggtacaaatggtatatacaattggccaattagagtgtgtcacctaccaatgttactttataaatgctttatttgatatatatt 33249445  T
Q  159 nnnaaagggtgtgccacgtggcacattataattgaacaatggtatata 206  Q
       |||||||||||||| ||||||| | ||||||| ||||| ||||||    
T  33249444 tttaaagggtgtgccacatggcacaatctaattgagcaatgatatata 33249397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 56 - 214
Target Start/End: Original strand, 21260792 - 21260950
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatatan 155  Q
    |||||||| | ||||||||||||| ||||| |||||| ||||||||||||||||||||||| ||||||||||||| |||  |||| |||||||||||||     
T  21260792 ttccacttatataccattaaggtaccaatgatatatatcattggccaattagagtgtgtcacctaccaatgttactttataaatgttttatttgatatat 21260891  T
Q  156 nnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatg 214  Q
          |||||||||||||| ||||||||| ||||||   |||| ||||||||||||||    
T  21260892 ttttttaaagggtgtgccacatggcacattctaattgggtaatgttatataccattatg 21260950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 50 - 231
Target Start/End: Original strand, 51811906 - 51812087
Alignment:
Q  50 tgcgggttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttg 149  Q
    ||||| ||||||| |||||||||||||||| ||| | ||||||  |||||||||||||||| || || ||||||||||||| |||  |||  ||| ||||    
T  51811906 tgcggattccactcgtgtaccattaaggtatcaaagatatatattattggccaattagagtatgccacctaccaatgttactttataaattttttttttg 51812005  T
Q  150 atatannnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
    |||||       ||||||||||||| ||| |||||| |||||| | ||||||||||||||||||| || ||||||| |||||    
T  51812006 atatatttttttaaagggtgtgccatgtgacacattctaattggataatggtatataccattatgatatacaagtgttatcc 51812087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 59 - 229
Target Start/End: Complemental strand, 52910219 - 52910050
Alignment:
Q  59 cacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatatannnn 158  Q
    |||||||||||||| | |||| ||||| |||||||||||||||||||| |||||| || |||||||| |||| |||  |||||||||||||||| |        
T  52910219 cacttgtgtaccataatggtaccaatgttatataccattggccaattaaagtgtgccacctaccaatattactttataaatgctttatttgata-aaaaa 52910121  T
Q  159 nnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctat 229  Q
       ||| ||| ||||||||||||||   ||||||| |||||||||||||||| ||| |||| |||||||||    
T  52910120 attaaaaggtatgccacgtggcacaccctaattgatcaatggtatataccataatggtacataagtgctat 52910050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 56 - 231
Target Start/End: Original strand, 55590480 - 55590644
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatatan 155  Q
    |||||||||||||||||||||||| |||||||||||| |||||  |||||| ||||||||| ||||||||||||           ||||||||||||||     
T  55590480 ttccacttgtgtaccattaaggtaccaatggtatatatcattgatcaattatagtgtgtcacctaccaatgtta-----------ctttatttgatatac 55590568  T
Q  156 nnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
          ||||| ||||||||||| |||||| ||||||  |||||| ||||||||||||| ||| ||||||||||||    
T  55590569 ttttttaaaggatgtgccacgtgacacattctaattgggcaatggaatataccattatggtacgcaagtgctatcc 55590644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 58 - 154
Target Start/End: Original strand, 52012778 - 52012874
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatata 154  Q
    |||||||||||||||||||||| ||||| |||||| ||||| ||||| | |||||| ||  |||||||||||| |||  |||| |||||||||||||    
T  52012778 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatgttttatttgatata 52012874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 231
Target Start/End: Original strand, 1796654 - 1796723
Alignment:
Q  162 aaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
    ||||| |||| ||||||||||| | |||||| ||||||||||||||||||||| |||||||||| |||||    
T  1796654 aaaggatgtgtcacgtggcacaatttaattggacaatggtatataccattatggtacacaagtgttatcc 1796723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 144
Target Start/End: Complemental strand, 34829253 - 34829168
Alignment:
Q  59 cacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgcttt 144  Q
    ||||| ||||| ||||||||| ||||| |||||| || |||||||||| ||||||||| ||||||||||||| |||  ||||||||    
T  34829253 cacttatgtactattaaggtaccaatgatatatatcaatggccaattaaagtgtgtcacctaccaatgttactttataaatgcttt 34829168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 35781021 - 35781083
Alignment:
Q  170 tgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatccc 232  Q
    |||||||||||||||| ||||||  |||||||||||||||||||| ||| |||||| ||||||    
T  35781021 tgccacgtggcacattctaattgggcaatggtatataccattatggtacgcaagtgatatccc 35781083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 154
Target Start/End: Complemental strand, 49999758 - 49999663
Alignment:
Q  59 cacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatata 154  Q
    |||||||||||||| ||| ||  |||| ||| |  |||||| ||||||||||||||||  |||||||||||  |||  ||||||||||||||||||    
T  49999758 cacttgtgtaccatcaagatactaatgttatgtgtcattggtcaattagagtgtgtcacataccaatgttattttataaatgctttatttgatata 49999663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 154
Target Start/End: Complemental strand, 9799534 - 9799438
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatata 154  Q
    |||||||| ||||||||||||| ||||| |||||| ||||| ||||  ||| |||| ||  |||||||||||| |||  |||| ||||||| |||||    
T  9799534 ccacttgtataccattaaggtaccaatgttatataacattgaccaacaagaatgtgccacataccaatgttactttataaatgttttatttaatata 9799438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 113
Target Start/End: Original strand, 49998486 - 49998537
Alignment:
Q  62 ttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtg 113  Q
    |||||||||||||||||| ||||  |||||| |||||||||||||| |||||    
T  49998486 ttgtgtaccattaaggtaccaatattatatatcattggccaattagggtgtg 49998537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 2e-42; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 56 - 230
Target Start/End: Complemental strand, 19357434 - 19357261
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatatan 155  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| || |||||||| |||| |||  ||||||||||||||||||     
T  19357434 ttccacttgtgtaccattagggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattactttataaatgctttatttgatata- 19357336  T
Q  156 nnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatc 230  Q
          ||||| ||| ||||||| |||||| |||||| |||||| |||||||||||||| |||||||||||||||    
T  19357335 ttttttaaaggatgtcccacgtgacacattctaattggacaatgatatataccattatggtacacaagtgctatc 19357261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 56 - 231
Target Start/End: Complemental strand, 11607707 - 11607532
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatatan 155  Q
    |||||||||| ||||||||||||| |||||||||||||||||| ||||||| |||||| || |||||||| |||| |||  |||| |||||||||||||     
T  11607707 ttccacttgtataccattaaggtaccaatggtatataccattgaccaattatagtgtgccacctaccaatattactttataaatgttttatttgatatac 11607608  T
Q  156 nnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
          ||||||||||||||| | |||||| |||||| ||||||||||||| ||||||| ||||||||||||||||    
T  11607607 ttttttaaagggtgtgccacgggccacattctaattggacaatggtatatatcattatggtacacaagtgctatcc 11607532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 63 - 231
Target Start/End: Complemental strand, 33858704 - 33858536
Alignment:
Q  63 tgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatatannnnnnna 162  Q
    ||||||||||||||||| |||| ||||||| ||||| ||||||| |||||| || ||||||||||||| |||  |||| |||||||||||||       |    
T  33858704 tgtgtaccattaaggtaccaatagtatatatcattgaccaattatagtgtgccacctaccaatgttactttataaatgttttatttgatatactttttta 33858605  T
Q  163 aagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
    |||||||||||||||| |||||| ||||||  |||||||||||||||||||| ||||||||||||||||    
T  33858604 aagggtgtgccacgtgacacattctaattgggcaatggtatataccattatggtacacaagtgctatcc 33858536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 58 - 232
Target Start/End: Original strand, 1826259 - 1826433
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatatannn 157  Q
    |||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||| |||||||| |||| ||    |||||||||||||||||       
T  1826259 ccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgtcacctaccaatattactttgtagatgctttatttgatatattt 1826358  T
Q  158 nnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatccc 232  Q
        ||||  |||||||| ||||||||| ||||||||||||| |||||| ||||||| |||||||||| ||||||    
T  1826359 ttttaaagtatgtgccacatggcacattttaattgaacaatgatatatatcattatgatacacaagtgatatccc 1826433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 74 - 231
Target Start/End: Original strand, 33271630 - 33271787
Alignment:
Q  74 aaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatatannnnnnnaaagggtgtgcc 173  Q
    |||||| ||||| |||||| ||||||||||||||||||||||||||| ||||||||| | |  ||||||||||||||||||       ||||| || |||    
T  33271630 aaggtaccaatgatatatatcattggccaattagagtgtgtcatctatcaatgttacttgataaatgctttatttgatatatttttttaaaggatgcgcc 33271729  T
Q  174 acgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
    |||||||||||| ||||||  |||| ||||||||||||||| |||| |||||||||||    
T  33271730 acgtggcacattctaattgggcaatagtatataccattatggtacataagtgctatcc 33271787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 56 - 192
Target Start/End: Complemental strand, 39570216 - 39570080
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatatan 155  Q
    ||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||  |||| |||||||||||||     
T  39570216 ttccacttgtgtatcattaaagtatcaatggtatataccattggccaattagagtgtgtcacctaccaatgttactttataaatgttttatttgatatac 39570117  T
Q  156 nnnnnnaaagggtgtgccacgtggcacattataattg 192  Q
          |||||||||||||| || || ||| ||||||    
T  39570116 ttttttaaagggtgtgccacctgacatattctaattg 39570080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 58 - 231
Target Start/End: Complemental strand, 38010785 - 38010611
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatata-nn 156  Q
    |||||||||||||||||||||| ||||| |||||| ||||||||||| |||||||| ||  |||||||||||| |||  ||| ||||||||||||||       
T  38010785 ccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgt 38010686  T
Q  157 nnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
         |||| ||||||||| |||||||   ||||||   |||| |||||| ||| ||| ||||||||||||||||    
T  38010685 tttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatcc 38010611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 58 - 154
Target Start/End: Original strand, 29989962 - 29990058
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatata 154  Q
    |||||||||||||||||||||| ||||| |||||| ||||| ||||| |||||||| ||  |||||||||||| |||  |||| |||||||||||||    
T  29989962 ccacttgtgtaccattaaggtatcaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatgttttatttgatata 29990058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 9827786 - 9827884
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatata 154  Q
    |||||||||||||||||||||||| |||||||||||||| || | ||||||||||||  || |||||||| |||| |||  |||  |||||||||||||    
T  9827786 ttccacttgtgtaccattaaggtaccaatggtatatacctttagtcaattagagtgtaccacctaccaatattactttataaatattttatttgatata 9827884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 58 - 154
Target Start/End: Original strand, 13015381 - 13015477
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatata 154  Q
    |||||||||||||||||||||| ||||| |||||| ||||| ||||| |||||||| ||  |||||||||||| |||  |||  |||||||||||||    
T  13015381 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatattttatttgatata 13015477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 118 - 207
Target Start/End: Original strand, 42148206 - 42148295
Alignment:
Q  118 ctaccaatgttacattaccaatgctttatttgatatannnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatatac 207  Q
    ||||||||||||| |||  |||| |||||||||||||       ||||||||| |||||| ||||||| |||||||||||||||||||||    
T  42148206 ctaccaatgttactttataaatgttttatttgatatatttttttaaagggtgtaccacgttgcacattctaattgaacaatggtatatac 42148295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 13086753 - 13086824
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgtta 129  Q
    |||||||||||||||||||||| ||||| |||||| ||||| ||||| |||||||| ||  |||||||||||    
T  13086753 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgtta 13086824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 154
Target Start/End: Complemental strand, 13421180 - 13421085
Alignment:
Q  59 cacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatata 154  Q
    ||||||||||||||||||||| ||||| |||||| |||||  |||| ||||||| |||  || ||||||||| |||  |||||||||||| |||||    
T  13421180 cacttgtgtaccattaaggtatcaatgttatataacattgatcaataagagtgtatcaaatatcaatgttactttataaatgctttatttaatata 13421085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 154
Target Start/End: Complemental strand, 13478216 - 13478120
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatata 154  Q
    |||||||||||||||||||| | ||||| |||||| ||||| ||||| |||||||| ||  ||||| |||||| |||  |||  |||||||||||||    
T  13478216 ccacttgtgtaccattaaggaaccaatgttatataacattgaccaataagagtgtgccacataccattgttactttataaatattttatttgatata 13478120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 225
Target Start/End: Original strand, 10292976 - 10293039
Alignment:
Q  162 aaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtg 225  Q
    ||||||||||||||||||||||   ||||||  ||||| |||||| ||||||| ||||||||||    
T  10292976 aaagggtgtgccacgtggcacaccttaattggccaatgttatataacattatggtacacaagtg 10293039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 85; Significance: 5e-40; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 59 - 231
Target Start/End: Complemental strand, 13176 - 13003
Alignment:
Q  59 cacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatatannnn 158  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||| ||||| || ||  ||||||||| ||| | |||||||||||||||||        
T  13176 cacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcgatgctttatttgatatatttt 13077  T
Q  159 nnnaaaggg-tgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
       |||||| |||||||||||||||||| |||| |  |||||||||||||||||||| ||||||||||||||||    
T  13076 tttaaagggttgtgccacgtggcacattctaatggggcaatggtatataccattatggtacacaagtgctatcc 13003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 2e-36; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 56 - 231
Target Start/End: Original strand, 35341534 - 35341709
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatatan 155  Q
    |||||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||| || ||||||||||||| |||  |||| |||||||||||||     
T  35341534 ttccacttgtgtaccattaaggtaccaatgatatataccattgaccaattatagtgtgccacctaccaatgttactttataaatgttttatttgatatac 35341633  T
Q  156 nnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
          ||||||||||||||||| |||||| |||||| |||||| |||||| ||||||| || | ||||| |||||    
T  35341634 ttttttaaagggtgtgccacgtgacacattctaattggacaatgatatatatcattatggtagataagtgttatcc 35341709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 58 - 231
Target Start/End: Original strand, 48250154 - 48250329
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatatannn 157  Q
    |||||||||||||||||||||| ||||| |||||| |||||| ||||||||||||| || ||||||||||||| |||   ||||||||||||||||        
T  48250154 ccacttgtgtaccattaaggtaccaatgatatatatcattggtcaattagagtgtgccacctaccaatgttactttatagatgctttatttgatattttt 48250253  T
Q  158 nnnnaaagggtgtgc--cacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
        ||||||| |||  || ||| |||||| |||||| ||||||||||||||||||||| ||||||||||||||||    
T  48250254 ttttaaagggtatgctacatgtgtcacattctaattggacaatggtatataccattatggtacacaagtgctatcc 48250329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 82 - 231
Target Start/End: Complemental strand, 32694717 - 32694568
Alignment:
Q  82 aatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatatannnnnnnaaagggtgtgccacgtggca 181  Q
    |||| |||||||||||||  |||||||||||  |||||| ||||||||| |||  ||| ||||||||||||||       ||||||||||||||||| ||    
T  32694717 aatgatatataccattggtaaattagagtgtcccatctatcaatgttactttataaattctttatttgatatatttttttaaagggtgtgccacgtgaca 32694618  T
Q  182 cattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
    |||| |||||   |||||||||||||||||||  ||||||||||||||||    
T  32694617 cattctaattaggcaatggtatataccattatagtacacaagtgctatcc 32694568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 56 - 231
Target Start/End: Original strand, 48072387 - 48072560
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatatan 155  Q
    |||||||||||||| ||||||||| |||| |||||  ||||||  ||||||||||||| ||  |  ||||||||  |||  |||  |||||||||| ||     
T  48072387 ttccacttgtgtactattaaggtaccaatagtata--ccattgatcaattagagtgtgccacatttcaatgttattttataaatattttatttgatgtat 48072484  T
Q  156 nnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
          |||||||||||||||||||||||| ||||||  |||||||||||||||||||| ||||||||||||||||    
T  48072485 ttttttaaagggtgtgccacgtggcacattctaattgggcaatggtatataccattatggtacacaagtgctatcc 48072560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 154
Target Start/End: Complemental strand, 40893213 - 40893116
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgc-tttatttgatata 154  Q
    |||||||| |||||| || |||  |||||||||||||||||| |||||||| ||| ||||||| ||||||||| |||  ||||| |||||||||||||    
T  40893213 ccacttgtataccatcaaagtattaatggtatataccattggtcaattagaatgtctcatctatcaatgttactttataaatgcttttatttgatata 40893116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 151
Target Start/End: Complemental strand, 31307041 - 31306951
Alignment:
Q  62 ttgtgtaccattaaggtaacaatggtatataccattggccaa-ttagagtgtgtcatctaccaatgttacattaccaatgctttatttgat 151  Q
    |||||||||||||| ||| ||||| |||||| ||||| |||| ||| ||||||  | ||||||||||||| |||  |||||||||||||||    
T  31307041 ttgtgtaccattaaagtatcaatgatatatatcattgtccaatttaaagtgtgctacctaccaatgttactttataaatgctttatttgat 31306951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 40856949 - 40857000
Alignment:
Q  162 aaagggtgtgccacgtggcacattataattgaacaatggtatataccattat 213  Q
    |||||||||||||| || |||||| |||||| |||||| |||||||||||||    
T  40856949 aaagggtgtgccacatgacacattctaattggacaatgatatataccattat 40857000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 63; Significance: 7e-27; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 56 - 231
Target Start/End: Original strand, 11193 - 11367
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatatan 155  Q
    ||||||||||||||||||||  || ||||| |||||| ||||| ||| ||| ||| |  || ||||||||||||| |||  |||| |||||||||||||     
T  11193 ttccacttgtgtaccattaaattaccaatgatatatatcattgacca-ttatagtataccacctaccaatgttactttataaatgttttatttgatatac 11291  T
Q  156 nnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
          ||||||||||||||||| |||||| ||| ||| |||||||||||||||||||| ||||||| ||||||||    
T  11292 atttttaaagggtgtgccacgtgacacattctaactgagcaatggtatataccattatggtacacaaatgctatcc 11367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 62; Significance: 3e-26; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 56 - 231
Target Start/End: Original strand, 34192 - 34365
Alignment:
Q  56 ttccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatatan 155  Q
    |||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||| ||  ||||||| |||| |||  |||  |||||||||||||     
T  34192 ttccacttgtgtaccattaaggtaccaatggtatatattattggccaattagagtgtgccacttaccaatattactttataaatattttatttgatata- 34290  T
Q  156 nnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 231  Q
          |||||||||| |||||| |||||| |||||| | |||| |||||||| ||||| ||||||| ||||||||    
T  34291 ttttttaaagggtgtgtcacgtgacacattctaattggataatgttatatacc-ttatggtacacaaatgctatcc 34365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 154
Target Start/End: Original strand, 73071 - 73168
Alignment:
Q  58 ccacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgc-tttatttgatata 154  Q
    |||||||| |||||| || |||  |||||||||||||||||| |||||||| ||| ||||||| ||||||||| |||  ||||| |||||||||||||    
T  73071 ccacttgtataccatcaaagtattaatggtatataccattggtcaattagaatgtctcatctatcaatgttactttataaatgcttttatttgatata 73168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 38; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 23094 - 23151
Alignment:
Q  59 cacttgtgtaccattaaggtaacaatggtatataccattggccaattagagtgtgtca 116  Q
    |||||||||| |||||||||| ||||||||||||| ||||||||||||| || |||||    
T  23094 cacttgtgtatcattaaggtaccaatggtatatactattggccaattagggtctgtca 23151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 23240 - 23174
Alignment:
Q  88 atataccattggccaattagagtgtgtcatctaccaatgttacattaccaatgctttatttgatata 154  Q
    ||||| |||||||||||||||||||| || |||||||| |||| |||  |||  |||||||||||||    
T  23240 atatatcattggccaattagagtgtgccacctaccaattttactttataaatattttatttgatata 23174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University