View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19236_high_11 (Length: 477)
Name: NF19236_high_11
Description: NF19236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19236_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 210 - 474
Target Start/End: Original strand, 47258691 - 47258955
Alignment:
| Q |
210 |
atatgcatggccttaaatttaaattctaatcattgggatgtgacttttaaggaatatttttgtcaatcactttaaatgactttattttaatgaataaaat |
309 |
Q |
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| T |
47258691 |
atatgcatggccttaaatttaaattctaatcattgggatgtgacttgtaaggaatatttttgtcaatcactttaaatgactttattttaatgaataaaat |
47258790 |
T |
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| Q |
310 |
ggcttatctttactcacaattggaaaattgatcatgtataaaggcatttttgtttaagatattttcagagtgaaatacattttgttttattctgctaaat |
409 |
Q |
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| T |
47258791 |
ggtttatctttactcacaattggaaaattgatcatgtataaaggcatttttgtttaagatattttcagagtgaaatacattttgttttattctgctaaat |
47258890 |
T |
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| Q |
410 |
actcagcttctcttccctttcattcaatttgaggatatggaatggaattcatattcttctcactc |
474 |
Q |
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| T |
47258891 |
actcagcttctcttccctttcattcaatttgaggatatggaatgaaattcatattcttttcactc |
47258955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 14 - 151
Target Start/End: Original strand, 47258507 - 47258644
Alignment:
| Q |
14 |
atttttgcattagaaatgtaaacagtaatcgattggctataactaagagtatacgattgaatgaagtttgatacattaacatcagaacaaagttaaaaga |
113 |
Q |
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| T |
47258507 |
atttttgcattagaaatgtaaacagtaatcgattggctataactaagagtatacgattgaatgaagtttgatacattaacatcagaacaaagttaaaaga |
47258606 |
T |
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| Q |
114 |
ataaaaaggaagctaacatcagagaagtatgcaacaca |
151 |
Q |
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| T |
47258607 |
ataaaaaggaagctaacatcagagaagtatgcagcaca |
47258644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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