View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19236_high_12 (Length: 450)
Name: NF19236_high_12
Description: NF19236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19236_high_12 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Complemental strand, 49433000 - 49432551
Alignment:
| Q |
1 |
tggtccttgctggggttgtgtgcccttatggccatagatgccatttccgtcatgcacttactgaacaagagaaagctatgtcacaacctaagcccagatc |
100 |
Q |
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| T |
49433000 |
tggtccttgctggggttgtgtgcccttatggccatagatgccatttccgtcatgcacttactgaacaagagaaagctatgtcacaacctaagcccagatc |
49432901 |
T |
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| Q |
101 |
aatgaagctggaaagatgaatggtctcatggaggtgtttgtttgactcaaagcatatacaacggtacataataatattcttgattgtgtaattacaacaa |
200 |
Q |
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| T |
49432900 |
aatgaagctggaaagatgaatggtctcatggaggtgtttgtttgactcaaagcatatacaacggtacataataatattcttgattgtgtaattacaacaa |
49432801 |
T |
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| Q |
201 |
tttacaaacagggacagtatgagctagctgaaaataattactttccattagaaagtaataccaaaaacaaaagggaacgtttgcagcaaattgaggtcta |
300 |
Q |
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| T |
49432800 |
tttacaaacagggacagtatgagctagctgaaaataattactttccattagaaagtaataccaaaaacaaaagggaacgcttgcagcaaattgaggtcta |
49432701 |
T |
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| Q |
301 |
tagcaggattcttgaggagaatgtgtatggccctcatgtctttcttttttctccctcataagtttgacattttgaattttgagcattacatacaaatacg |
400 |
Q |
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| T |
49432700 |
tagcaggattcttgaggagaatgtgtatggccctcatgtctttcttttttctcccccataagtttgacattttgaattttgagcattacatacaaatacg |
49432601 |
T |
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| Q |
401 |
tctatatgggtcccaacataacgaaccaaagggaaggtactctatgaaat |
450 |
Q |
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| T |
49432600 |
tctatatgggtcccaacataacgaaccaaagggaaggtactctatgaaat |
49432551 |
T |
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Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 39170794 - 39170714
Alignment:
| Q |
1 |
tggtccttgctggggttgtgtgcccttatggccatagatgccatttccgtcatgcacttactgaacaagagaaagctatgt |
81 |
Q |
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| T |
39170794 |
tggtccttgctggggttgtgtgcccgtgtggccatagatgccatttccgtcatgcacttactgaacaagagaaagctatgt |
39170714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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