View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19236_high_13 (Length: 441)

Name: NF19236_high_13
Description: NF19236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19236_high_13
NF19236_high_13
[»] chr7 (4 HSPs)
chr7 (1-422)||(354086-354507)
chr7 (218-422)||(10580686-10580889)
chr7 (231-422)||(10575299-10575489)
chr7 (105-155)||(10580612-10580662)
[»] chr3 (7 HSPs)
chr3 (231-422)||(21584677-21584867)
chr3 (232-422)||(25084951-25085140)
chr3 (232-422)||(24923540-24923729)
chr3 (292-395)||(31825664-31825766)
chr3 (232-422)||(24919966-24920155)
chr3 (231-422)||(24981958-24982148)
chr3 (232-422)||(24497339-24497528)
[»] chr8 (1 HSPs)
chr8 (231-414)||(14261120-14261302)
[»] chr4 (2 HSPs)
chr4 (232-422)||(22898466-22898655)
chr4 (232-422)||(22950134-22950323)


Alignment Details
Target: chr7 (Bit Score: 410; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 354086 - 354507
Alignment:
Q  1 tctgatctgttgaaggttgaagggaaggagacaagtgaaattcatacattatgtaactgtaaagtagagaattagctttattctttccctctattactcc 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  354086 tctgatctattgaaggttgaagggaaggagacaagtgaaattcatacattatgtaactgtaaagtagagaattagctttattctttccctctattactcc 354185  T
Q  101 ataattgtgatcattgctggagcagtgttatggattcttcaacgcataacaaatgatgagtttcagttgtctccatagaaacatgtccaaatagtgttga 200  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  354186 ataattgtgatcattgctggagcagtgttatggattcttcaatgcataacaaatgatgagtttcagttgtctccatagaaacatgtccaaatagtgttga 354285  T
Q  201 gtcattgtgtgtgtttgtaatgtctggtcaaggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  354286 gtcattgtgtgtgtttgtaatgtctggtcaaggaaagggaggtgcaaagtgacatagcaaggttctttgcggtaacattcaaggaataacaaagccagcg 354385  T
Q  301 attcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  354386 attcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatt 354485  T
Q  401 tgtgatgctgttacttacactg 422  Q
    ||||||||||||||||||||||    
T  354486 tgtgatgctgttacttacactg 354507  T

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Target: chr7; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 218 - 422
Target Start/End: Original strand, 10580686 - 10580889
Alignment:
Q  218 taatgtctggtcaaggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgag 317  Q
    |||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10580686 taatgtctggtcaatgaaagggaggtgcaaagtgatattgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgag 10580785  T
Q  318 aagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttactta 417  Q
    ||||| ||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||  |||||||||||||||    
T  10580786 aagagttggtgtgaagaggatcagtgg-tttgatctatgaggaaataagaggactgttgaagattttcttgcagaataagattcttgatgctgttactta 10580884  T
Q  418 cactg 422  Q
    |||||    
T  10580885 cactg 10580889  T

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Target: chr7; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 231 - 422
Target Start/End: Original strand, 10575299 - 10575489
Alignment:
Q  231 aggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtg 330  Q
    ||||||||| ||||||||| ||||||||||||||||  | |  ||||| |||||||| |||||||||||||||||| |||||||||||||||| ||||||    
T  10575299 aggaaaggggggtgcaaagagacatcgcaaggttctccgtgacaacatccaaggaatcacaaagccagcgattcgtcgattggcgagaagaggaggtgtg 10575398  T
Q  331 aagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactg 422  Q
    || || ||||||||  || ||||||||||||| |||||| ||||||||||| |||||| ||||||  ||  | |||||||||||||||||||    
T  10575399 aaaagaatcagtgg-attgatctatgaggaaacaagaggtgtgttgaagatcttcttggagaatgttataagagatgctgttacttacactg 10575489  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 10580612 - 10580662
Alignment:
Q  105 ttgtgatcattgctggagcagtgttatggattcttcaacgcataacaaatg 155  Q
    |||| ||||||| ||||||||||| ||||||||||||||||||||||||||    
T  10580612 ttgttatcattgttggagcagtgtcatggattcttcaacgcataacaaatg 10580662  T

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Target: chr3 (Bit Score: 84; Significance: 9e-40; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 231 - 422
Target Start/End: Complemental strand, 21584867 - 21584677
Alignment:
Q  231 aggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtg 330  Q
    ||||||||||||||||||| ||||  | || |||||| | | ||||||||| ||||| || ||||||||||||||| ||||||||||||||||||||||     
T  21584867 aggaaagggaggtgcaaagagacacaggaaagttcttcgtgataacattcagggaatcaccaagccagcgattcgtcgattggcgagaagaggtggtgtt 21584768  T
Q  331 aagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactg 422  Q
    ||||| |||||||| ||| || |||||||||| |||||||||  | |||||||||||| |||||| |||| ||||||| ||||| |||||||    
T  21584767 aagagaatcagtgg-tttgatttatgaggaaacaagaggagttcttaagattttcttggagaatgtgattcgtgatgcggttacgtacactg 21584677  T

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Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 232 - 422
Target Start/End: Original strand, 25084951 - 25085140
Alignment:
Q  232 ggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtga 331  Q
    |||||||||||||||||| | ||| | ||||||||| | | |||||| || || || || ||||| || |||||||||||||||||||||||||||||||    
T  25084951 ggaaagggaggtgcaaagaggcatagaaaggttcttcgtgataacatccagggtatcaccaagcctgccattcgtagattggcgagaagaggtggtgtga 25085050  T
Q  332 agaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactg 422  Q
    |||| |||||||| ||| || ||||| ||||  ||||| || |||||||| |||||| |||||| |||  ||||||| ||||| |||||||    
T  25085051 agagaatcagtgg-tttgatatatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtgatccgtgatgcagttacatacactg 25085140  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 232 - 422
Target Start/End: Complemental strand, 24923729 - 24923540
Alignment:
Q  232 ggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtga 331  Q
    |||||||||||||||||| | ||| | ||||||||| | | |||||| || || || || ||||| || |||||| ||||||| |||||||||||||| |    
T  24923729 ggaaagggaggtgcaaagaggcatagaaaggttcttcgtgataacatccagggtatcaccaagcctgctattcgtcgattggcaagaagaggtggtgtta 24923630  T
Q  332 agaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactg 422  Q
    |||| |||||||| ||| |||||||| ||||  ||||| || |||||||| |||||| ||||||  ||| |||||||||| || |||||||    
T  24923629 agagaatcagtgg-tttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcattcgtgatgctgtgacatacactg 24923540  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 292 - 395
Target Start/End: Complemental strand, 31825766 - 31825664
Alignment:
Q  292 aagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcag 391  Q
    ||||| || |||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||  ||||| || |||||||| |||||| ||    
T  31825766 aagcctgccattcgtcgattggcgagaagaggtggtgtgaagaggatcagtgg-tttgatctatgaagaaactagaggtgtcttgaagatcttcttggag 31825668  T
Q  392 aatg 395  Q
    ||||    
T  31825667 aatg 31825664  T

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Target: chr3; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 232 - 422
Target Start/End: Complemental strand, 24920155 - 24919966
Alignment:
Q  232 ggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtga 331  Q
    |||||||||||||||||| | ||| | || |||||| | | |||||| || || || || ||||| || |||||| ||||||| ||||||||||||||||    
T  24920155 ggaaagggaggtgcaaagaggcataggaaagttcttcgtgataacatccagggtatcaccaagcctgcaattcgtcgattggcaagaagaggtggtgtga 24920056  T
Q  332 agaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactg 422  Q
    |||| ||||| || ||| |||||||| ||||  ||||| || |||||||| |||||  ||||||  ||| |||||||||| || |||||||    
T  24920055 agagaatcagcgg-tttgatctatgaagaaaccagaggtgtcttgaagatcttcttagagaatgtcattcgtgatgctgtgacatacactg 24919966  T

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Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 231 - 422
Target Start/End: Original strand, 24981958 - 24982148
Alignment:
Q  231 aggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtg 330  Q
    ||||||||||||||||||| | ||| | || |||||| | | |||||| || || || || ||||| || |||||| ||||||| ||||||||||||||     
T  24981958 aggaaagggaggtgcaaagaggcataggaaagttcttcgtgataacatccagggtatcaccaagcctgctattcgtcgattggcaagaagaggtggtgtt 24982057  T
Q  331 aagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactg 422  Q
    ||||| |||||||| ||| || ||||| ||||  ||||| || |||||||| |||||| ||||||  ||  ||||||| ||||| |||||||    
T  24982058 aagagaatcagtgg-tttgatatatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactg 24982148  T

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Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 232 - 422
Target Start/End: Complemental strand, 24497528 - 24497339
Alignment:
Q  232 ggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtga 331  Q
    |||||||||||||||||| | ||| | ||||||||| | |  ||||| || || || || ||||| || |||||| ||||||| |||||||||||||| |    
T  24497528 ggaaagggaggtgcaaagaggcataggaaggttcttcgtgacaacatccagggtatcaccaagcctgctattcgtcgattggcaagaagaggtggtgtta 24497429  T
Q  332 agaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactg 422  Q
    |||| ||||||||  || |||||||| ||||  ||||| || |||||||| |||||| | |||| |||  ||||||| ||||| |||||||    
T  24497428 agagaatcagtgg-attgatctatgaagaaaccagaggtgtcttgaagatcttcttggaaaatgtgatccgtgatgcagttacatacactg 24497339  T

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Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 231 - 414
Target Start/End: Complemental strand, 14261302 - 14261120
Alignment:
Q  231 aggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtg 330  Q
    ||||||||||||||||||| |||||||||| || ||| | |  ||||| |||||||| |||||||||||||||||  |||| ||||||||||| ||||||    
T  14261302 aggaaagggaggtgcaaagagacatcgcaaagtgcttcgtgacaacatccaaggaatcacaaagccagcgattcggcgattagcgagaagaggaggtgtg 14261203  T
Q  331 aagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttac 414  Q
    ||||| ||||| ||  || || ||||| ||||   | || |||||||||||||||||| |||||| |||  | |||||||||||    
T  14261202 aagagaatcagcgg-gttgatttatgaagaaactcgcggtgtgttgaagattttcttggagaatgtgataagagatgctgttac 14261120  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 232 - 422
Target Start/End: Original strand, 22898466 - 22898655
Alignment:
Q  232 ggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtga 331  Q
    |||||||| || |||||| ||||||| ||||| ||| | |  ||||| || |||||||||||||||||||||||| |  | ||  | ||||| || ||||    
T  22898466 ggaaagggtggagcaaagcgacatcgtaaggtgcttcgtgacaacatccagggaataacaaagccagcgattcgtcgtcttgctcgtagaggaggagtga 22898565  T
Q  332 agaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactg 422  Q
    || | |||||||| ||| || |||||||| | | | || ||||||||||| || ||| |||||| |||| | |||||||| ||||||||||    
T  22898566 agcgtatcagtgg-tttgatttatgaggagacacgtggcgtgttgaagatatttttggagaatgtgattagagatgctgtgacttacactg 22898655  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 232 - 422
Target Start/End: Original strand, 22950134 - 22950323
Alignment:
Q  232 ggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtga 331  Q
    |||||||| || |||||| ||||||| ||||| ||| | |  ||||| || |||||||||||||||||||||||| |  | ||  | ||||| || ||||    
T  22950134 ggaaagggtggagcaaagcgacatcgtaaggtgcttcgtgacaacatccagggaataacaaagccagcgattcgtcgtcttgctcgtagaggaggagtga 22950233  T
Q  332 agaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactg 422  Q
    || | |||||||| ||| || |||||||| | | | || ||||||||||| || ||| |||||| |||| | |||||||| ||||||||||    
T  22950234 agcgtatcagtgg-tttgatttatgaggagacacgtggcgtgttgaagatatttttggagaatgtgattagagatgctgtgacttacactg 22950323  T

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