View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19236_high_19 (Length: 351)
Name: NF19236_high_19
Description: NF19236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19236_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 104; Significance: 8e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 7 - 172
Target Start/End: Original strand, 35774055 - 35774220
Alignment:
| Q |
7 |
attaaatcttatatgggaagagtttggtgagaaggacgcggttaattgaagttggcttgtcaggtataagctaagnnnnnnnnnnnnn-cgaaaggaggt |
105 |
Q |
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| T |
35774055 |
attaaatcttatatgggaagagtt-ggtgagaaggacgcggttaattgaagttggcttgtcaagtataagctaagttttttttttctttcgaaaggaggt |
35774153 |
T |
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| Q |
106 |
ataagctaagttggtatgtaatatggctgattattgcaggtattttaccaaaaagagattattctaa |
172 |
Q |
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| T |
35774154 |
ataagctaagttggtatgtaatgtggctgattattgcaggtattttaccaaaaagagattattctaa |
35774220 |
T |
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Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 277 - 325
Target Start/End: Original strand, 35774325 - 35774373
Alignment:
| Q |
277 |
ctgccaagtccggtttgaagacaggacctccgactctttatcctatata |
325 |
Q |
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| T |
35774325 |
ctgccaagtccggtttgaagacaggacctccgactctttatcctatata |
35774373 |
T |
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